AT2G45960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plasma membrane intrinsic protein 1B | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plasma membrane intrinsic protein 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10376 Blast hits to 10338 proteins in 2169 species: Archae - 101; Bacteria - 4994; Metazoa - 1330; Fungi - 442; Plants - 2464; Viruses - 0; Other Eukaryotes - 1045 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18910450..18911579 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29133.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGKEEDVRV GANKFPERQP IGTSAQSDKD YKEPPPAPLF EPGELASWSF WRAGIAEFIA TFLFLYITVL TVMGVKRSPN MCASVGIQGI AWAFGGMIFA 101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR 201: NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIFNKDN AWDDHVSVSL LTKFTIQSKV SIIG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)