AT2G20790.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.907 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : clathrin adaptor complexes medium subunit family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8950574..8952054 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45814.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 427 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKDYVKLCRR SDCGPAVGED LSLSSLLLNI SSITGAFMVA HAFGDIISGD TVEPEVVVSV SPSVGGLFDS LTGSIGISSR AKPVAAPVAS SNPSGAAITG 101: ATASDAPKAG SRLLDRDLLR NFIATAMPFG TPLDLSLSNI SAMKANGFSS ADPPPQELKQ PAWKPYLYKG KQRLLFTIHE TVSAAMYDRD EIPDNVSVAG 201: QINCRAELEG LPDVSFPLAG LSTAHIEAIS FHPCAQVPAH GIDKQNIVFQ PPLGNFVLMR YQAGCGLGPP VKGFYQLSMV SEDEGAFLFK VHLMEGYKAP 301: LSMEFCTITM PFPRRRIVAF DGTPSAGTVL TTEHSVEWRI LGSGRSLSGK SLEATFPGTI KFSPLQSRRK GDGDDEESED ESAENVVNVE DFLVQKMNKD 401: LPAAELEEPF CWQAYDYAKV CMSLASF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)