AT1G44780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 18105 Blast hits to 11200 proteins in 808 species: Archae - 37; Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants - 674; Viruses - 183; Other Eukaryotes - 6565 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16909753..16912060 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52268.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||
| Length | 463 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METAEMNHNS GKSNLKNVDA TEIEFKILAA LRSRVTYLRN EADCFTLVSV RRMLEEDIGL EKCDLDVYKS FVKEHLVKCL EEAGNNDTSE NSQETEREDD 101: EIPTKEVAEQ SEEHEPMNDA GEENTSKREA KDVKGKGNKE TLQRDIKRAL RKRASYIKAN SETITMASLR RLLEEDLKLE KESLDLFKKF INKELDEVLQ 201: LPDAPKCSTE SIVKNVKKKV KSTPSKMVSS EYNSDSDTEG NVDNEEVAVK KTMARKVKLS KPEMMGKRKS ENGKQVSGRK KAKHTEIDSE NDSDSGDSEK 301: SLKQTKETAT DVYGKRVEHL KSVIKSCGMS VPPNIYKKAK QAPQEKREAM LIEELEQILA KEGLSSDPSA LEIKEVKKRK NISRELEGID TNNIVWNSRR 401: RSSTSFAPPP KPKVTAESES ESDEPEDSEN EEESNEKAER GSQSEEVEEE SNSEEDDGGE ESD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)