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AT1G43850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SEUSS transcriptional co-regulator
Curator
Summary (TAIR10)
Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.
Computational
Description (TAIR10)
seuss (SEU); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 74651 Blast hits to 25837 proteins in 1166 species: Archae - 31; Bacteria - 2985; Metazoa - 26009; Fungi - 8425; Plants - 3606; Viruses - 613; Other Eukaryotes - 32982 (source: NCBI BLink).
Protein Annotations
BioGrid:26206eggNOG:ENOG410IEKIeggNOG:ENOG410XT7CEMBL:AC006423EMBL:AF378782EMBL:AK118277EMBL:CP002684
EnsemblPlants:AT1G43850EnsemblPlants:AT1G43850.1EnsemblPlants:AT1G43850.2entrez:840981GeneID:840981Genevisible:Q8W234GO:GO:0001666
GO:GO:0003677GO:GO:0005654GO:GO:0006351GO:GO:0006355GO:GO:0006974GO:GO:0006979GO:GO:0009617
GO:GO:0009620GO:GO:0009624GO:GO:0009733GO:GO:0009793GO:GO:0009909GO:GO:0010272GO:GO:0030154
GO:GO:0046898GO:GO:0046982GO:GO:0048467GO:GO:0048481GO:GO:0060090GO:GO:0071217Gramene:AT1G43850.1
Gramene:AT1G43850.2hmmpanther:PTHR10378hmmpanther:PTHR10378:SF10HOGENOM:HOG000006265InParanoid:Q8W234IntAct:Q8W234InterPro:IPR029005
KEGG:ath:AT1G43850ncoils:CoilOMA:HQNAAYNPANTHER:PTHR10378PaxDb:Q8W234Pfam:PF01803Pfam:Q8W234
PhylomeDB:Q8W234PIR:D96502PRIDE:Q8W234PRO:PR:Q8W234ProteinModelPortal:Q8W234Proteomes:UP000006548RefSeq:NP_001117434.1
RefSeq:NP_175051.1STRING:3702.AT1G43850.1TAIR:AT1G43850tair10-symbols:SEUUniGene:At.12073UniProt:Q8W234
Coordinates (TAIR10) chr1:+:16617872..16621596
Molecular Weight (calculated) 96237.90 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.76
Length 877 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)