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AT1G36980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.543
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YCSGeggNOG:KOG3393EMBL:AY050785EMBL:AY079344EMBL:CP002684EnsemblPlants:AT1G36980EnsemblPlants:AT1G36980.1
entrez:840608GeneID:840608GO:GO:0016021Gramene:AT1G36980.1hmmpanther:PTHR13180hmmpanther:PTHR13180:SF3HOGENOM:HOG000243178
IntAct:Q949Z8InterPro:IPR007919KEGG:ath:AT1G36980OMA:LIYWTSHPANTHER:PTHR13180Pfam:PF05255PhylomeDB:Q949Z8
Proteomes:UP000006548RefSeq:NP_564477.1STRING:3702.AT1G36980.1TAIR:AT1G36980TMHMM:TMhelixUniGene:At.15380UniProt:Q949Z8
Coordinates (TAIR10) chr1:+:14025084..14026727
Molecular Weight (calculated) 14960.10 Da
IEP (calculated) 4.27
GRAVY (calculated) 0.71
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLAELWAIF GPGFSGAVFG TGWWFWVDAV VCSSIQVPFV HYLPGIFASL GALMFNCVRK EDIDYSPYDE GEWRLKLWLF IAYVVAFVSL AASVGLLIQD
101: SVVKTGPSTW TGVAGVFQCV FVLISGLMYW TSHSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)