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AT1G20780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : senescence-associated E3 ubiquitin ligase 1
Curator
Summary (TAIR10)
Encodes a protein containing a U-box and an ARM domain.
Computational
Description (TAIR10)
senescence-associated E3 ubiquitin ligase 1 (SAUL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of chlorophyll catabolic process, regulation of chlorophyll biosynthetic process, leaf senescence, regulation of abscisic acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2); Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0; Bacteria - 20; Metazoa - 434; Fungi - 161; Plants - 1969; Viruses - 3; Other Eukaryotes - 203 (source: NCBI BLink).
Protein Annotations
BioGrid:23907EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AC069251EMBL:AY059775EMBL:AY096753
EMBL:CP002684EnsemblPlants:AT1G20780EnsemblPlants:AT1G20780.1entrez:838668Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:838668
Genevisible:Q9LM76GO:GO:0004842GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0010115GO:GO:0010150
GO:GO:0010271GO:GO:0010380GO:GO:0016874GO:GO:0070696GO:GO:0090359hmmpanther:PTHR22849hmmpanther:PTHR22849:SF4
HOGENOM:HOG000241783InParanoid:Q9LM76IntAct:Q9LM76InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024iPTMnet:Q9LM76KEGG:ath:AT1G20780OMA:NQLPMKLPaxDb:Q9LM76Pfam:PF00514Pfam:PF04564
Pfam:Q9LM76Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q9LM76PRIDE:Q9LM76PRO:PR:Q9LM76PROSITE:PS50176
PROSITE:PS51698ProteinModelPortal:Q9LM76Proteomes:UP000006548RefSeq:NP_564125.2SMART:SM00185SMART:SM00504SMR:Q9LM76
STRING:3702.AT1G20780.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT1G20780tair10-symbols:ATPUB44tair10-symbols:PUB44tair10-symbols:SAUL1
UniGene:At.21947UniPathway:UPA00143UniProt:Q9LM76
Coordinates (TAIR10) chr1:+:7217812..7220609
Molecular Weight (calculated) 88385.20 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.02
Length 801 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSSDGDQS DDSSHFERGV DHIYEAFICP LTKEVMHDPV TLENGRTFER EAIEKWFKEC RDSGRPPSCP LTSQELTSTD VSASIALRNT IEEWRSRNDA
101: AKLDIARQSL FLGNAETDIL QALMHVRQIC RTIRSNRHGV RNSQLIHMII DMLKSTSHRV RYKALQTLQV VVEGDDESKA IVAEGDTVRT LVKFLSHEPS
201: KGREAAVSLL FELSKSEALC EKIGSIHGAL ILLVGLTSSN SENVSIVEKA DRTLENMERS EEIVRQMASY GRLQPLLGKL LEGSPETKLS MASFLGELPL
301: NNDVKVLVAQ TVGSSLVDLM RSGDMPQREA ALKALNKISS FEGSAKVLIS KGILPPLIKD LFYVGPNNLP IRLKEVSATI LANIVNIGYD FDKATLVSEN
401: RVENLLHLIS NTGPAIQCKL LEVLVGLTSC PKTVPKVVYA IKTSGAIISL VQFIEVREND DLRLASIKLL HNLSPFMSEE LAKALCGTAG QLGSLVAIIS
501: EKTPITEEQA AAAGLLAELP DRDLGLTQEM LEVGAFEKII SKVFGIRQGD IKGMRFVNPF LEGLVRILAR ITFVFNKEAR AINFCREHDV ASLFLHLLQS
601: NGQDNIQMVS AMALENLSLE SIKLTRMPDP PPVNYCGSIF SCVRKPHVVN GLCKIHQGIC SLRETFCLVE GGAVEKLVAL LDHENVKVVE AALAALSSLL
701: EDGLDVEKGV KILDEADGIR HILNVLRENR TERLTRRAVW MVERILRIED IAREVAEEQS LSAALVDAFQ NADFRTRQIA ENALKHIDKI PNFSSIFPNI
801: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)