AT1G02080.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulators | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:373694..386682 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 263779.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||
| Length | 2377 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTPSKVAGHT RFLLHSFHDS DVDSIALQLS QFVDFGVETS IPVLKTCLDC FTARRSHPNS LQLEKVVSLL FKHVLKLSNL ATLLPHALND FELTQESVDD 0101: LTTTLNFSIS ENIGFALALT DFERLDAKTT GRNLLLAQIE QLCANTGQIL SSELIHSVLS FLRKSEDLSM HLDSFLQFLS SAQPRDDFSF ALTPMLAQQV 0201: HEAPVFRSMD FHTDSADNDL DAILAEIDKE VSVGDLMGEL GCGFTADAQQ CKEILSSFAP LGEATISRIV GNVSRTCADL EDNQTTFSTF TVALGSCIPT 0301: ELPTPRSWNV DILVDTIKQL APGISWRKVI ENLDHDGFDI PNMESFSFFM RIYKAACKEP FPLDAVCGSV WKNMDGQLSF LKHAISAPPE VFTFMHSPRK 0401: LVYIDNMHSQ EQQLGLSNHA WLSLDLLDVL CQLAERGHAV LVSSLLQYPL TQCPRTLLLG MTHIKTAYNL IQREVVSAIL PVIITSPQDS GFIHNLWHQN 0501: AELVLWGIID AQHLKADSML RIIEICHELK ILSVVLESVP VSSSIRLAVL ASLRGLLDIE NWLPNCLYMY KDLFAEECLK FVKNVHFSES DDFRAKIFHP 0601: SDPLSDLHLE ATTSLLKVLK AHDNAITSSQ LVEEIEKVNA AILDCNPKLQ NGEAKDSSAP NAYGDDVEAE ANAYFHQMFS SHLSVDAMVQ MLSRYKESLV 0701: PREKLIFECM IANLFEEYRF FPKYPERQLK IASILFGSVI KHQLISSLTL GMALRLVLDS LRKPADSKMF LFGSKALEQF VNRLVELPQY CNHILQISHL 0801: RSTHPELVTV IEQALSRISS GNLESDASVS HPGPSQSFPG NGELSGSGIG QPALQLSSPL QLQQKNEVPS VPSNEAKPLL PSLSTTSVDV SVNPKNPGIP 0901: TSSSTSTGFV RPARATTSTR FGSALNIETL VAAAERRENA IEAPPSDVQD KVSFIINNIS TTNIESKGKE FAEILPQQYY PWFAQYMVMK RASIEPNFHD 1001: LYLKFLDKVD SKLLFKEILQ NTYENCKVLL GSELIKSSSE ERSLLKNLGS WLGRLTIGRN YVLRAREIDP KSLIVEAYEK GLMIAVIPFT SKVLEPCQNS 1101: IAYQPPNPWT MAILGLLAEI YSMPNLKMNL KFDIEVLFKN LGVEMKEVVP TSLLKDRKRE IDGNPDFSNK DPGVTQISQP QMIPEPKTIS PLKQIDLPLD 1201: VANSPNTDVP SKLLSQYVAP QRVYTNTLMD EEKVATLGLP EQLPSPQGLF QSTPSPLFSI SQLSAALPNI GNHVVINQKL SAFGMHFPFQ RVVPLAMDRA 1301: IKEIVSGIVQ RSVCIACQTT KELVLKDYAL EPDESRIYNA AHLMVASLAG SLAHVTCKEP LRTSISGHLR NSLQGLNISN DALEQIVQLV TNDNLDLGCA 1401: AIEQAATEKA IQTIDADIAQ QLLLRRKHRD GAGSSFFDPN ILSQNSVSFI PESLRPKPGH LSLSQQRVYE DFVQHPWQKQ STQTSHGLSA ASSSSGDVAL 1501: GSGYGPVSGK VASEFLSNAG NARMDMVSRP SDISVDGFES SPVSLLSSQV DPAGDSSSLQ FTKSLPTSEL NLAESSDAAT KETGTSLQTL TSAATMERLG 1601: ASNITQPSLS TRDALDKCQI VTQKMEELVA NNAGDDEIQA VISEVPEIIL RCISRDEAAF AVAQKAFKAL YENASSNLHV SANLAILVAI RDVCKRVVKE 1701: LTSWVIYSEE DRKLNKDITI GLIQRELLSL AEYNVHMAKH LDGGRNKTAT DFAISLLQSL VTEESSVISE LHSLVDALAK LASKSGSSES LQQLIDIIRN 1801: PVTNTAGLSD SSTGNDNNDR QKDEKVACNT TNTEESTSLD YVESDPAGFQ NRVSTLFKNW YQICELPGAN ETACSQYVLH LHQTGLLKGD DTTESFFRIL 1901: LELSVAHCIS SEDINSGAVQ SPQQPQSPSF LIIDMYAKLV FSILKYFPEQ ESSSRLFLLS EIMADTVRFI QKDAEDKKTS LNSKPYFRLF INWLLDLCSL 2001: DPGTDGANFQ VLTAFANAFH ALQPLKIPAF SFAWLELVSH RSFMPKLLTV NGQKGWPYVQ RLLVDLLQFL EPFLRNAELG GPVHFLYKGT LRVLLVLLHD 2101: FPEFLCDYHF TFCDVIPSSC IQMRNIILSS FPRNMRLPDP STPNLKIDLL PEIVEAPCIL SEVDAALKAK QMKNDVDEYL TSRQQNSTFL SELKTKLLLS 2201: SSEASSAGTR YSVPLINSLV LYTGMQAIQQ LQAGETQAQN VVALQMFKYL SMELDTEGRY LFLNAIANQL RYPNNHTHYF SFIMLYLFFE SDQEIIQEQI 2301: TRVLLERLIV NRPHPWGLLI TFIELIKNPR YSFWKQAFIR CAPEIEKLFE SVARSCGGLK PVDEGMVSGG WVSDNSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)