AT5G65440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26152015..26156896 | ||||||||||||||||||||
| Molecular Weight (calculated) | 118188.00 Da | ||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||
| Length | 1050 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFREAGLRNI GEDVDSRWTI GNRKLDAKSV PNANSGHGFG FRSAPPLSSS IKPVRAQNGL GRNGAKVFGA ADDLSDSATS TEVSYEAEAC GVRNNISSHN 0101: EFERRNVEAG TSGRTLNGTS TSTSSLPRFP TFHASEQGPW SAMIAYEACV RLCLHSWSTD SVSEASYFLN NECTIMRNAF SLQRFFLHSE EELLGKGPSE 0201: LVTETSVPKS KKTIGKIKLQ VRRIKMGLDP PPGCNIATLT VSKEKLEVVR HHIVELNSTL SSGWKAARKV HVTPQVPLNG SLSRQSLAYM QAAARYLKQV 0301: SKAVKKEIVT SHTGPQTYEA VQETYSCSLR LKSSPEDDQI KTQPGSGETF IFLPDSLGDD LIIEVRDSKA QLLGRVVAQL AAMADDPSEK LRWLPIYHEP 0401: EHELIGRIQL TFSYSSSLDE KTKCGLVAET SAYDLVLEVA MKAERFQRRN LLFKGPWHWM ITRFASYYGV SDAYTRLRYL SYVMDVASPT KDCLDLIHDF 0501: LFPIIMTSNH RAVLSHQENR LLGEIDEQIQ QILASAFENY KSLAELSFSG MKDVFESATG TPAPAIESAV KLYGLLNDVL TPEAQLKLCR YFQAASKKRS 0601: RRHLLDTNDL LNNRSEGVPV DPMVLAASYQ KMKSLILSLK NEISTDIAIH DCNVLPSFID LPNHSAAIYS VDVCNRLREF LLVWPPPGPS PAVVDLVITT 0701: ADFQRDLSSW HINPIKGGVN AKELFYSYIT TWIEEKRRVL YELCKLETSK ACVEIPGLTS PFVDEMYERL NGTLDEYDII IRRWPEYAIS LEKVVADSEK 0801: AIVEAMEKQF TEILSPLKES KIFGLKIVKK FTKGTPNPYS VPKELGVLLN SMKRVLDILR PSIENRFKSW NSYIPDGENR VLGERLSEVT VLLRSKFRSY 0901: MQALVEKLAE NTRIQSHMKL KTIIHDLRET TAEPDVRNRM TSLKDLLDKT IDHLHGVFLP DVFVAICRGI WDRMGQDVLR LLEDRKDNVT WHKGPRIAVS 1001: VLDEIFATQM QSLLGNGLKP EHLEPPRSMM ELRSMLCKDS TDYREGGYNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)