suba logo
AT5G60520.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ5QeggNOG:ENOG410YCHDEMBL:AB011483EMBL:BT011223EMBL:CP002688EnsemblPlants:AT5G60520EnsemblPlants:AT5G60520.1
entrez:836173GeneID:836173Gramene:AT5G60520.1hmmpanther:PTHR31656hmmpanther:PTHR31656:SF8HOGENOM:HOG000238685InterPro:IPR009646
KEGG:ath:AT5G60520OMA:CPTECPQPfam:PF06830PhylomeDB:Q9FKJ5Proteomes:UP000006548RefSeq:NP_200860.1STRING:3702.AT5G60520.1
TAIR:AT5G60520UniGene:At.29156UniGene:At.71243UniProt:Q9FKJ5
Coordinates (TAIR10) chr5:-:24331787..24332947
Molecular Weight (calculated) 37836.30 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.37
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRVLVTIIV LVSVSSVSAT EKGKKLKKGA YDAASTNYNV LYPLGSGQER VQCLARGSCN QKILTCPKEC PERKPKMNKK KKACFIDCSS KCEVTCKWRK
101: ANCNGYGSLC YDPRFVGGDG VMFYFHGNKD GNFAIVSDEN LQINAHFIGT RPAGRTRDFT WVQAFSVMFD SHNLVIAAKK VASWDDSVDS LVVRWNGEEV
201: EVPTEGEAEW RIDLDEREVI VERTDERNNV RVTVSGIVQI DIQVRPIGKE EDRVHKYQLP KDDAFAHLET QFKFFNLSDL VEGVLGKTYR PGYVSPVKTG
301: VPMPMMGGED KYQTPSLFSP LCNVCRFQGK TGPGVAKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)