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AT5G39660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cycling DOF factor 2
Curator
Summary (TAIR10)
Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.
Computational
Description (TAIR10)
cycling DOF factor 2 (CDF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1150 Blast hits to 1134 proteins in 76 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 6; Plants - 1095; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:19213eggNOG:ENOG410IJPCeggNOG:ENOG410YN7NEMBL:AB012243EMBL:AY056804EMBL:BT015791EMBL:CP002688
EnsemblPlants:AT5G39660EnsemblPlants:AT5G39660.1EnsemblPlants:AT5G39660.2entrez:833962GeneID:833962Genevisible:Q93ZL5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009908GO:GO:0046872Gramene:AT5G39660.1
Gramene:AT5G39660.2hmmpanther:PTHR31089hmmpanther:PTHR31089:SF4HOGENOM:HOG000239772InParanoid:Q93ZL5IntAct:Q93ZL5InterPro:IPR003851
KEGG:ath:AT5G39660OMA:AKSSIWEPaxDb:Q93ZL5Pfam:PF02701Pfam:Q93ZL5Pfscan:PS50884PhylomeDB:Q93ZL5
PRIDE:Q93ZL5PRO:PR:Q93ZL5ProDom:PD007478PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_568567.1
RefSeq:NP_851106.1scanprosite:PS01361STRING:3702.AT5G39660.1TAIR:AT5G39660tair10-symbols:CDF2UniGene:At.26292UniProt:Q93ZL5
Coordinates (TAIR10) chr5:+:15878920..15880712
Molecular Weight (calculated) 49810.60 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.82
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)