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AT5G50680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SUMO activating enzyme 1B
Curator
Summary (TAIR10)
Encodes a protein that is part of a heterodimeric SUMO E1 activating enzyme.
Computational
Description (TAIR10)
SUMO activating enzyme 1B (SAE1B); CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: SUMO-activating enzyme 1B (TAIR:AT5G50580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20373BioGrid:20385eggNOG:COG0476eggNOG:KOG2014
EMBL:AB025619EMBL:AF510524EMBL:AK227039EMBL:AY086686
EMBL:AY091012EMBL:AY117230EMBL:CP002688EnsemblPlants:AT5G50580.2
EnsemblPlants:AT5G50680EnsemblPlants:AT5G50680.1entrez:835127entrez:835139
Gene3D:3.40.50.720GeneID:835127GeneID:835139Genevisible:P0DI12
GO:GO:0005634GO:GO:0005829GO:GO:0007346GO:GO:0016925
GO:GO:0019948hmmpanther:PTHR10953InParanoid:P0DI12InterPro:IPR000011
InterPro:IPR000594InterPro:IPR016040KEGG:ath:AT5G50580KEGG:ath:AT5G50680
KO:K10684PaxDb:P0DI12Pfam:P0DI12Pfam:P0DI13
Pfam:PF00899PhylomeDB:P0DI12PRINTS:PR01849PRO:PR:P0DI12
ProteinModelPortal:P0DI12Proteomes:UP000006548Reactome:R-ATH-3065676Reactome:R-ATH-3065678
RefSeq:NP_001032050.1RefSeq:NP_568732.2RefSeq:NP_568741.1RefSeq:NP_851162.1
SMR:P0DI12STRING:3702.AT5G50680.1SUPFAM:SSF69572TAIR:AT5G50580
tair10-symbols:ATSAE1Btair10-symbols:SAE1BUniGene:At.7138UniPathway:UPA00886
UniProt:P0DI12UniProt:P0DI13
Coordinates (TAIR10) chr5:+:20618842..20620743
Molecular Weight (calculated) 35656.80 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.14
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGDELTEQE TALYDRQIRV WGAGAQRRLS KSHVLVSGIK GTVAEFCKNI VLAGVGSVTL LDDRLVTTEV FNANFLILPD ENAYVGKTVA EICCDSLKDF
101: NPMVHVSIEK GDLSTLGVDF FEKFDVVVIG YSSRATKKAV NEKCRNLAKD VAFYTVDCRG SCGEIFVDLQ NYKYTKKKLD ETVECELTFP SFEEAVSVPW
201: KPMPRRTAKL YFAMRVIELF EETEGRKPGE CSLSDLPRVL KLKKELCEGN SVSENHIPDI LLERLVSNNT EFPPACAIIG GILGQEVIKV ISGKGEPLKN
301: FFYFDAEDGK GVIEDLSHKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)