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AT5G23380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.731
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF789)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF789); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G03610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTUAeggNOG:ENOG41107I6EMBL:AB025642EMBL:CP002688EnsemblPlants:AT5G23380EnsemblPlants:AT5G23380.1entrez:832402
GeneID:832402GO:GO:0016020Gramene:AT5G23380.1hmmpanther:PTHR31343hmmpanther:PTHR31343:SF3HOGENOM:HOG000237909InterPro:IPR008507
KEGG:ath:AT5G23380OMA:IFTIKPFPfam:PF05623PhylomeDB:Q9FGE1Proteomes:UP000006548RefSeq:NP_197729.1TAIR:AT5G23380
UniGene:At.31012UniProt:Q9FGE1
Coordinates (TAIR10) chr5:+:7866742..7870098
Molecular Weight (calculated) 33737.40 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.41
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGRVRTNFE RFLECSSPRV PIQFYTQARG SSSSSPIALG AIEEEEVRKP RIVLNDIWSA CKNWSTVGIE VPLSLENFDS DVKQYYNPSL SAIQIFTIKP
101: FSDDSRSSAI GIDGTETGSA ITDSDSNGKL QCLDAGDLGY LYFQYNEVER PFDRFPLTFK MADLAEEHTG LSSLTSSDLS PNSWISIAWY PIYPIPPVIG
201: VDGISAAFLT YHLLKPNFPE TIGKDDKGNE QGESSTPEVL LPPFGAMTYK AFGNLWMMPG TSDYQNREMN EESADSWLRK RGFSHSDFNF FMSRKFYGGP
301: Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)