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AT5G18230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription regulator NOT2/NOT3/NOT5 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5665eggNOG:KOG2150EMBL:CP002688EnsemblPlants:AT5G18230
EnsemblPlants:AT5G18230.1entrez:831941ExpressionAtlas:F4JWJ6GeneID:831941
GO:GO:0005634GO:GO:0006355Gramene:AT5G18230.1hmmpanther:PTHR23326
hmmpanther:PTHR23326:SF1InterPro:IPR007207InterPro:IPR007282InterPro:IPR012270
iPTMnet:F4JWJ6ncoils:CoilPaxDb:F4JWJ6Pfam:PF04065
Pfam:PF04153PIRSF:PIRSF005290PRIDE:F4JWJ6ProteinModelPortal:F4JWJ6
Proteomes:UP000006548RefSeq:NP_568361.1SMR:F4JWJ6STRING:3702.AT5G18230.2
TAIR:AT5G18230UniGene:At.7555UniProt:F4JWJ6
Coordinates (TAIR10) chr5:-:6021610..6027031
Molecular Weight (calculated) 92957.30 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.74
Length 843 amino acids
Sequence (TAIR10)
(BLAST)
001: MGASRKLQGE IDRVLKKVQE GVDVFDSIWN KVYDTDNVNQ KEKFEADLKK EIKKLQRYRD QIKTWIQSSE IKDKKVSASY EQSLVDARKL IEKEMERFKI
101: CEKETKTKAF SKEGLGQQPK TDPKEKAKSE TRDWLNNVVS ELESQIDSFE AELEGLSVKK GKTRPPRLTH LETSITRHKD HIIKLELILR LLDNDELSPE
201: QVNDVKDFLD DYVERNQDDF DEFSDVDELY STLPLDEVEG LEDLVTAGPL VKGTPLSMKS SLAASASQVR SISLPTHHQE KTEDTSLPDS SAEMVPKTPP
301: PKNGAGLHSA PSTPAGGRPS LNVPAGNVSN TSVTLSTSIP TQTSIESMGS LSPVAAKEED ATTLPSRKPP SSVADTPLRG IGRVGIPNQP QPSQPPSPIP
401: ANGSRISATS AAEVAKRNIM GVESNVQPLT SPLSKMVLPP TAKGNDGTAS DSNPGDVAAS IGRAFSPSIV SGSQWRPGSP FQSQNETVRG RTEIAPDQRE
501: KFLQRLQQVQ QGHGNLLGIP SLSGGNEKQF SSQQQNPLLQ QSSSISPHGS LGIGVQAPGF NVMSSASLQQ QSNAMSQQLG QQPSVADVDH VRNDDQSQQN
601: LPDDSASIAA SKAIQSEDDS KVLFDTPSGM PSYMLDPVQV SSGPDFSPGQ PIQPGQSSSS LGVIGRRSNS ELGAIGDPSA VGPMHDQMHN LQMLEAAFYK
701: RPQPSDSERP RPYSPRNPAI TPQTFPQTQA PIINNPLLWE RLGSDAYGTD TLFFAFYYQQ NSYQQYLAAK ELKKQSWRYH RKFNTWFQRH KEPKIATDEY
801: EQGAYVYFDF QTPKDENQEG GWCQRIKNEF TFEYSYLEDE LVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)