AT5G06670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G12020.1); Has 49021 Blast hits to 33870 proteins in 1834 species: Archae - 494; Bacteria - 4897; Metazoa - 23456; Fungi - 4567; Plants - 3807; Viruses - 58; Other Eukaryotes - 11742 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2048243..2055019 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110043.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 986 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSKQVSKTR NGGFSKLKTV ESSASSTTSS SKLYQEASVD SHSSPTSSSV RSKPQLPPKP LQSKENVTVT VRFRPLSPRE IRKGEEIAWY ADGETIVRNE 101: NNQSIAYAYD RVFGPTTTTR NVYDVAAQHV VNGAMAGVNV TLSVNSTTGT IFAYGVTSSG KTHTMHGNQR SPGIIPLAVK DAFSIIQETP RREFLLRVSY 201: FEIYNEVVND LLNPAGQNLR IREDEQGTYI EGIKEEVVLS PAHVLSLIAA GEEHRHIGST SFNLLSSRSH TMFTLTIESS PLGDNNEGGA VHLSQLNLID 301: LAGSESSKAE TSGLRRKEGS YINKSLLTLG TVISKLTDRR ASHVPYRDSK LTRLLESSLS GHGRVSLICT VTPASSNSEE THNTLKFAHR AKHIEIQAAQ 401: NKIIDEKSLI KKYQYEIRQL KEELEQLKQG IKPVSQLKDI SGDDIDIVLL KQKLEEEEDA KAALLSRIQR LTKLILVSNK TPQTSRFSYR ADPRRRHSFG 501: EEELAYLPHK RRDLTDDENL ELYVSREGTP EIIDDAFIEE KKTRKHGLLN WLKIKKKDSS LGGSSLSDKS SAVKSNSTPS TPQGEGSDFH TESRLSEGSA 601: LADQIIETME NREAHEDSFH EIETPETRIK MIDQMEILRE QQKTLSEEMA QQSRSFKLLS EEAAKAPQNE EIKAEIINLN GDIKAKNDQI ATLGKQILDF 701: VIASHDELDK SDIVQAVSEM RAQLNEKCFE LEVKAADNRI IQEQLTEKTS FCEDLQEEVA NLKQQLSDAL ELGDINSVTC HMQQSSQSPN KNEEKVIEAQ 801: AFEIEELKLK AAELSELNEQ LEIRNKKLAE ESSYAKELAS AAAIELKALS EEIARLMNHN ERLAADLAAV QKSSVTTPQG KTGNLRNGRR ESVSKRKEQE 901: NSLMELKREL TVSKEREVSF EAALIEKIQR EAELQRTVEE SKQREAYLEN ELANMWGLVA KLRSQGAANS GLSDSVSETR IEHFGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)