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AT3G12020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 40862 Blast hits to 28121 proteins in 1485 species: Archae - 327; Bacteria - 3144; Metazoa - 20118; Fungi - 3973; Plants - 3090; Viruses - 66; Other Eukaryotes - 10144 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0242EMBL:CP002686EnsemblPlants:AT3G12020
EnsemblPlants:AT3G12020.1entrez:820376ExpressionAtlas:F4J8L3Gene3D:3.40.850.10
GeneID:820376GO:GO:0003777GO:GO:0005524GO:GO:0005874
GO:GO:0007018Gramene:AT3G12020.1hmmpanther:PTHR24115hmmpanther:PTHR24115:SF70
InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417InterPro:IPR027640
iPTMnet:F4J8L3ncoils:CoilPANTHER:PTHR24115PaxDb:F4J8L3
Pfam:PF00225Pfscan:PS50067PRIDE:F4J8L3PRINTS:PR00380
PROSITE:PS00411PROSITE:PS50067ProteinModelPortal:F4J8L3Proteomes:UP000006548
RefSeq:NP_187809.3scanprosite:PS00411SMART:SM00129SMR:F4J8L3
STRING:3702.AT3G12020.2SUPFAM:SSF52540TAIR:AT3G12020UniGene:At.43261
UniProt:F4J8L3
Coordinates (TAIR10) chr3:+:3827016..3834146
Molecular Weight (calculated) 108473.00 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.76
Length 965 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRQGSKSR KAGLKGADST ASSTTSSSKL YQETSIDGHS SPASSSAQSK QQFFSPDPLP QTAQRSKENV TVTVRFRPLS PREIRQGEEV AWYADGETIV
101: RNEHNPTIAY AYDRVFGPTT TTRNVYDIAA HHVVNGAMEG INGTIFAYGV TSSGKTHTMH GDQRSPGIIP LAVKDAFSII QETPNREFLL RISYMEIYNE
201: VVNDLLNPAG HNLRIREDKQ GTFVEGIKEE VVLSPAHALS LIAAGEEQRH VGSTNFNLLS SRSHTIFTLT IESSPLGDKS KGEAVHLSQL NLVDLAGSES
301: SKVETSGVRR KEGSYINKSL LTLGTVISKL TDVRASHVPY RDSKLTRILQ SSLSGHDRVS LICTVTPASS SSEETHNTLK FAHRAKHIEI QAEQNKIIDE
401: KSLIKKYQRE IRQLKEELEQ LKQEIVPVPQ LKDIGADDIV LLKQKLEDGQ VKLQSRLEEE EEAKAALLSR IQRLTKLILV STKNPQASRL PHRFNPRRRH
501: SFGEEELAYL PYKRRDMMDD EQLDLYVSVE GNHEIRDNAY REEKKTRKHG LLNWLKPKKR DHSSSASDQS SVVKSNSTPS TPQGGGSHLH TESRLSEGSP
601: LMEQLSEPRE DREALEDSSH EMEIPETSNK MSDELDLLRE QKKILSEEAA LQLSSLKRMS DEAAKSPQNE EINEEIKVLN DDIKAKNDQI ATLERQIMDF
701: VMTSHEALDK SDIMQAVAEL RDQLNEKSFE LEVKAADNRI IQQTLNEKTC ECEVLQEEVA NLKQQLSEAL ELAQGTKIKE LKQDAKELSE SKEQLELRNR
801: KLAEESSYAK GLASAAAVEL KALSEEVAKL MNQNERLAAE LATQKSPIAQ RNKTGTTTNV RNNGRRESLA KRQEHDSPSM ELKRELRMSK ERELSYEAAL
901: GEKEQREAEL ERILEETKQR EAYLENELAN MWVLVSKLRR SQGADSEISD SISETRQTEQ TEGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)