AT4G38120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17888668..17896060 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129407.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 1165 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFTAAASSSV GRWRTAFLSL RDEISTTPPP PVPLLLEDLL FSQSHSLISA VSHLPLHELT SDCLFLLDLV SKADGPDWIP VSRHTCQLIH DVCARLLFQL 0101: NSSSWPLLLH SFASVLEFLL RQPMPSSPYS AAYFSRIEPV IQCFETLRRL APMHPENIHL VKFLVRVVPL LHQDLVLSYG FSNQDPSPTL LVEKKLPQQN 0201: RLWDSMALAF DMFGRAFSLS ESLFPTDVSQ CTLEVLRKVM DVLASKGQLV EDRFMWRYMP LVLWRLQFTP FFLGSIRLVA LLASLRMFFC FGLTGPPQLS 0301: VSDVVHNDKH LNVKLSPLIS GVSKNAKNTP YRPPHLRKRD DLNTRQPVSS SWRRLSAHDS GSSDVISSDS DFSDSDGSVP DSYFAQSSKV RIAAIVCIQD 0401: LCQADSKSFT TQWVTLFPTS DVLKPRKFEA TLMTCLLFDP HLKVRIASAS ALATMMDGPS SIFLQVAEYK ESTKYGSFMP LSNSLGLILM QLHTGILHLI 0501: HSDNHGRLLI QLFKILLLLI SSTPYSRMPG ELLPKVIMSL HARINEGFPF KNDKTGLLVA AIGCLSAAFS TFPPQMKVHN MLLDETSAGF NGCEWNSGVL 0601: STLFRFAEQF SDASTCIEAL QVLRAVALNY PTLVPAYWER VSILVYKLLQ SAVVEDSPTT WKSSVRESVG YNGDKVLTAA IKVLDGCLRA ISGFKGTEDL 0701: QYDRLMDTPF TSDCIRSIRI SSAPSYGFDN TQEPIFQAGC DQWSEAIRKH IVLVLHHGSA VVRSTTVTCF AGITSSIFSA FNKQEKDFIT SSIITAALHD 0801: KTPSVRSAAC RAIGVISCFP ETSLSAEIYE KFILAVEANT RDSLTSVRIT ASWALANLCD ALRYRVDDRS FEGLKTTSQV VDALIECALR LTEDGDKVKS 0901: NAVRALGSIS KYVKLRCMTS IKSVDQDVLP FPHQQSSNSH HLSCAVDTRW LERTVQAFLS CVTTGNVKVQ WNVCHALSNL FSNETVKLQD MDWAPSVFSI 1001: LLLLLRDASN FKIRIQAASA LAVPATPLAY GRSFPDVVKG VEHTLQSLHS DRETTPANFK YKRSLENQLT STMLHLLSLV SSCHFEALSE FLIRKASFLE 1101: EWLRGLCVTL KEEDNVSGSS GTSTSGGKQK KELISRAIRS LARSLRAGHS SEMAQKLQEL DSNVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)