AT4G37160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 15 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 15 (sks15); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 16 (TAIR:AT2G23630.1); Has 5537 Blast hits to 5515 proteins in 1034 species: Archae - 14; Bacteria - 1701; Metazoa - 277; Fungi - 2124; Plants - 1252; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17494820..17497124 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60780.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQTNLLVCK LFIGALFWLG SVLVNAEDPY MFYTWTVTYG TRSPLGVPQQ VILINGQFPG PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG 101: VLGTNCPIQP NSNWTYQFQL KDQIGTYTYF ASTSLHRASG AFGALNINQR SVITTPYPTP DGDFTLLVSD WFSNMTHKDL RKSLDAGSAL PLPDALLING 201: VSKGLIFTGQ QGKTYKFRVS NVGIATSINF RIQNHTMSLI EVEGAHTLQE SYESLDVHVG QSMTVLVTLK ASVRDYFIVA STRFTKPVLT TTASLRYQGS 301: KNAAYGPLPI GPTYHIHWSM KQARTIRMNL TANAARPNPQ GSFHYGTIPI NRTLVLANAA TLIYGKLRYT VNRISYINPT TPLKLADWYN ISGVFDFKTI 401: ISTPTTGPAH IGTSVIDVEL HEFVEIVFQN DERSIQSWHM DGTSAYAVGY GSGTWNVTMR KRYNLVDAVP RHTFQVYPLS WTTILVSLDN KGMWNLRSQI 501: WSRRYLGQEL YVRVWNDEKS LYTEAEPPLN VLYCGKAKRP L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)