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AT4G37160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKU5 similar 15 (sks15); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 16 (TAIR:AT2G23630.1); Has 5537 Blast hits to 5515 proteins in 1034 species: Archae - 14; Bacteria - 1701; Metazoa - 277; Fungi - 2124; Plants - 1252; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-26-MONOMEREC:3.1.1.11eggNOG:COG2132eggNOG:KOG1263EMBL:AL161590EMBL:CP002687EMBL:Z99707
EnsemblPlants:AT4G37160EnsemblPlants:AT4G37160.1entrez:829870Gene3D:2.60.40.420GeneID:829870GO:GO:0005507GO:GO:0009505
GO:GO:0009506GO:GO:0016722GO:GO:0030599Gramene:AT4G37160.1hmmpanther:PTHR11709hmmpanther:PTHR11709:SF113HOGENOM:HOG000241637
InterPro:IPR001117InterPro:IPR008972InterPro:IPR011706InterPro:IPR011707KEGG:ath:AT4G37160OMA:DAVPRHTPfam:PF00394
Pfam:PF07731Pfam:PF07732PhylomeDB:O23170PIR:A85439Proteomes:UP000006548RefSeq:NP_195433.1SMR:O23170
STRING:3702.AT4G37160.1SUPFAM:SSF49503TAIR:AT4G37160tair10-symbols:sks15TMHMM:TMhelixUniGene:At.31268UniProt:O23170
Coordinates (TAIR10) chr4:-:17494820..17497124
Molecular Weight (calculated) 60780.80 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.15
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQTNLLVCK LFIGALFWLG SVLVNAEDPY MFYTWTVTYG TRSPLGVPQQ VILINGQFPG PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG
101: VLGTNCPIQP NSNWTYQFQL KDQIGTYTYF ASTSLHRASG AFGALNINQR SVITTPYPTP DGDFTLLVSD WFSNMTHKDL RKSLDAGSAL PLPDALLING
201: VSKGLIFTGQ QGKTYKFRVS NVGIATSINF RIQNHTMSLI EVEGAHTLQE SYESLDVHVG QSMTVLVTLK ASVRDYFIVA STRFTKPVLT TTASLRYQGS
301: KNAAYGPLPI GPTYHIHWSM KQARTIRMNL TANAARPNPQ GSFHYGTIPI NRTLVLANAA TLIYGKLRYT VNRISYINPT TPLKLADWYN ISGVFDFKTI
401: ISTPTTGPAH IGTSVIDVEL HEFVEIVFQN DERSIQSWHM DGTSAYAVGY GSGTWNVTMR KRYNLVDAVP RHTFQVYPLS WTTILVSLDN KGMWNLRSQI
501: WSRRYLGQEL YVRVWNDEKS LYTEAEPPLN VLYCGKAKRP L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)