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AT4G31400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : damaged DNA binding;DNA-directed DNA polymerases
Curator
Summary (TAIR10)
Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.
Computational
Description (TAIR10)
CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
EC:2.3.1.-eggNOG:ENOG410XTJXeggNOG:KOG3014EMBL:AL021633
EMBL:AL161578EMBL:CP002687EMBL:EU077499EnsemblPlants:AT4G31400
EnsemblPlants:AT4G31400.1entrez:829267Gene3D:3.40.630.30GeneID:829267
Genevisible:A7UL74GO:GO:0000070GO:GO:0000724GO:GO:0005634
GO:GO:0005737GO:GO:0007062GO:GO:0009553GO:GO:0009793
GO:GO:0016407GO:GO:0034089GO:GO:0045132GO:GO:0046872
GO:GO:0048364GO:GO:0048609GO:GO:0048653GO:GO:0051301
GO:GO:0060772GO:GO:0080186Gramene:AT4G31400.1hmmpanther:PTHR11076
hmmpanther:PTHR11076:SF35HOGENOM:HOG000240897InParanoid:A7UL74InterPro:IPR016181
InterPro:IPR028005InterPro:IPR028009InterPro:IPR033257iPTMnet:A7UL74
KEGG:00061+2.3.1.-KEGG:00253+2.3.1.-KEGG:00261+2.3.1.-KEGG:00310+2.3.1.-
KEGG:00330+2.3.1.-KEGG:00332+2.3.1.-KEGG:00340+2.3.1.-KEGG:00350+2.3.1.-
KEGG:00564+2.3.1.-KEGG:00565+2.3.1.-KEGG:00604+2.3.1.-KEGG:00623+2.3.1.-
KEGG:00626+2.3.1.-KEGG:00627+2.3.1.-KEGG:00642+2.3.1.-KEGG:00650+2.3.1.-
KEGG:00680+2.3.1.-KEGG:00903+2.3.1.-KEGG:00904+2.3.1.-KEGG:00906+2.3.1.-
KEGG:00940+2.3.1.-KEGG:00942+2.3.1.-KEGG:00950+2.3.1.-KEGG:00960+2.3.1.-
KEGG:00965+2.3.1.-KEGG:ath:AT4G31400KO:K11268OMA:EFGEISF
PANTHER:PTHR11076:SF35PaxDb:A7UL74Pfam:A7UL74Pfam:PF13878
Pfam:PF13880PhylomeDB:A7UL74PIR:T04507PRIDE:A7UL74
PRO:PR:A7UL74ProteinModelPortal:A7UL74Proteomes:UP000006548Reactome:R-ATH-2468052
RefSeq:NP_194868.2SMR:A7UL74STRING:3702.AT4G31400.1SUPFAM:SSF55729
TAIR:AT4G31400tair10-symbols:CTF7UniGene:At.50388UniProt:A7UL74
Coordinates (TAIR10) chr4:+:15237411..15239266
Molecular Weight (calculated) 38990.30 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.51
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MQAKINSFFK PSSSSSIAAS VTTDTDDGLA VWENNRNAIV NTYQRRSAIT ERSEVLKGCI EKTLKKGSSS VPKNHKKKRN YTQFHLELGQ SDFLLRHCAE
101: CGAKYAPGDE LDEKNHQSFH KDYMYGLPFK GWQNEKAFTS PLFIKNRIVM VSENDSPAHR NKVQEVVKMM EVELGEDWIL HQHCKVYLFI SSQRISGCLV
201: AEPIKEAFKL IASPDDERQL QKESSSSPST SIQFGNIVLQ REVSKRCRTS DDRLDNGVIV CEEEAKPAVC GIRAIWVSPS NRRKGIATWL LDTTRESFCN
301: NGCMLEKSQL AFSQPSSIGR SFGSKYFGTC SFLLYKAQLI DTHFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)