AT4G29380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein kinase family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
protein kinase family protein / WD-40 repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), WD40 repeat 2 (InterPro:IPR019782), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), HEAT, type 2 (InterPro:IPR021133), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G33770.1); Has 29441 Blast hits to 28057 proteins in 1177 species: Archae - 18; Bacteria - 2884; Metazoa - 11045; Fungi - 5111; Plants - 4360; Viruses - 46; Other Eukaryotes - 5977 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14458822..14464692 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 168133.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1494 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGNKIARTTQ VSATEYYLHD LPSSYNLVLK EVLGRGRFLK SIQCKHDEGL VVVKVYFKRG DSIDLREYER RLVKIKDVFL SLEHPHVWPF QFWQETDKAA 0101: YLVRQYFYSN LHDRLSTRPF LSLVEKKWLA FQLLLAVKQC HEKDICHGDI KCENVLLTSW NWLYLADFAS FKPTYIPYDD PSDFSFFFDT RGQRLCYLAP 0201: ERFYEHGGET QVAQDAPLKP SMDIFAVGCV IAELFLEGQP LFELAQLLAY RRGQHDPSQH LEKIPDPGIR KMILHMIQLE PEARLSAEDY LQNYVGVVFP 0301: NYFSPFLHTL YCCWNPLPSD MRVATCQGIF QEILKKMMEN KSGDEIGVDS PVTSNPMNAS TVQETFANHK LNSSKDLIRN TVNSKDEIFY SISDALKKNR 0401: HPFLKKITMD DLGTLMSLYD SRSDTYGTPF LPVEGNMRCE GMVLIASMLC SCIRNIKLPH LRREAILLLR SCSLYIDDDD RLQRVLPYVV ALLSDPTAIV 0501: RCAAMETLCD ILPLVRDFPP SDAKIFPEYI FPMLSMLPED TEESVRICYA SNIAKLALTA YGFLIHSFQL SDVGVLNELN SQQISTTPAS ETPSHLQKAN 0601: GNAQLQQLRK TIAEVVQELV MGPKQTPNVR RALLQDIGEL CFFFGQRQSN DFLLPILPAF LNDRDEQLRS VFFEKIVYVC FFVGQRSVEE YLLPYIDQAL 0701: SDQTEAVIVN ALECLSTLCK SSFLRKRALL QMIECVYPLL CYPSQWVRRA VVTFIAASSE CLGAVDSYAF IAPVIRSYLS RLPASIASEE GLLSCLKPPV 0801: TREVVYRIFE KTRNPEFMAK QRKMWYSSSP QSKDWESVDL FDKDAGELNS VECRAEQKQS VEGKKQIKSA SKQPEVQGKY AEKDAKLRIP RNPRPNASNT 0901: VELRDPVYPE KLQFSGFMAP YVSGANSFIE PENIPLYSFS MDKRAATNPP VASESSLQMN SLGMGSLSVP WMDSMSKSFN LASSVPVPKL ISGSFHVGTN 1001: PKQFYRVVHE PESRENDQIS SAISKFQDLG VSSSSKSASV TSEDASSPAD LVGEPSLSRT SVPDSGWKPR GVLVAHLQEH RSAVNDIATS SDHSFFVSAS 1101: DDSTVKVWDS RKLEKDISFR SRLTYHLEGS RGMCTTMLRN STQVVVGASD GVIHMFSIDH ISRGLGNVVE KYSGIVDIKK KDVKEGALVS LLNYTADSLS 1201: GPMVMYSTQN CGIHLWDTRS DLDAWTLKAN PEEGYVSSLV TSPCGNWFVS GSSRGVLTLW DLRFRVPVNS WQYPIICPIE KMCLCFLPPS VSVSTTMKPL 1301: IYVAAGCNEV SLWNAEGGSC HQVLRVANYE NETDVSEFQW KLPSNKVNPK PNHRQNMSSK YRIEELNEPP PRLPGIRSLL PLPGGDLLTG GTDLKIRRWD 1401: YSSPERSYCI CGPSLKGVGN DDFYELKTNT GVQFVQETKR RPLATKLTAK AVLAAAATDT AGCHRDSVQS LASVKLNQRL LISSSRDGAI KVWK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)