AT4G28760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3741) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14208640..14211811 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102909.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 924 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNELRGRKAQ KIESPVPGCL GKMVNLFDLG IAVNGNKLLT DKPHLDGSSL SRSRSDVTRM PGPSYKGHSE AELIMSDLRR SASSKLSGTP MKKLIAREMS 101: KEVEHKQSPT NVVAKLMGLE TLPQTHQETA TQRSKSRSNS HSSLNHSMTS TDNEVQKYQD FSREFKDVYE TWQSPQKVSR SRDCSPRKGR YDESTTEKQM 201: ALVRQKFSEA KRLVTDDSLH QSKEFQDALE VLSSNKDLFV QFLQESNSFS QQNLSDFHHV PPHSEAKRIT VLRPSKAGET EKYVVQGRRN KQVKKLASSS 301: QETGWGNRDL GYPSPYVNRG TEEHTVQPTR IVVLKPSLGK SLDIKAVSSS QSSPRGLHSR GYFDEPEDVE TKEVAKEITR QVRENLMGHH RNETQSSSVL 401: SNGYIGDDSS FNKSDNEDLV GNLSDSEIMS PASRHSWDCP NRFDSLFSPS SFSRASFSPE SSVCREAKKR LSERWALMSV SGRTQPLKHV SRTSSTLGEM 501: LALTETKVTT ESGEGSYEIV PATRVSTSCI TSDLSQVEMA SDSLNILARS KSVSDVRLNG ETSVLGSSKV QAPRELTKTG SLKSSWKVSN LFFFKNNKAS 601: KEKRDASQCS SMSQLAAPSP VTLTGKTSED CVFPIDCLPP VSSEQQSIIL GEEEVTTPKP LATGNTSENQ DQPSPISVLF PPFEEECASI PECSGSTKHW 701: SSQGDEMSLK SNLIDKSPPI GSIARLLSWD DDSCTDNIAK PAMGVHEEED WHLFIEMILT AAGFSSGCIV SHDPIMSRWH MPNSPLDPSL RDKYTNPDNN 801: NIKEFIHEGK RRQQRSTRKL IFDRINSIVS ETTTTRTGNG SLHFDLVEHV WAQLKDWVSD EPSKRDSGED MDANSLAAES LVKDEIVGRT WTHSLQVEID 901: DFGIEIEKRL LQELVEEAVI DLTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)