suba logo
AT4G26600.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2168-MONOMEReggNOG:COG0144eggNOG:KOG1122EMBL:AY070425EMBL:AY133836EMBL:CP002687EnsemblPlants:AT4G26600
EnsemblPlants:AT4G26600.1entrez:828767Gene3D:3.40.50.150GeneID:828767GO:GO:0003723GO:GO:0005730GO:GO:0006364
GO:GO:0008757Gramene:AT4G26600.1hmmpanther:PTHR22807hmmpanther:PTHR22807:SF30HOGENOM:HOG000224258InterPro:IPR001678InterPro:IPR011023
InterPro:IPR018314InterPro:IPR023267InterPro:IPR023273InterPro:IPR029063InterPro:IPR031341KEGG:ath:AT4G26600KO:K14835
ncoils:CoilOMA:EKETHNEPfam:PF01189Pfam:PF17125Pfscan:PS51686PhylomeDB:Q8VYM6PRINTS:PR02008
PRINTS:PR02012PROSITE:PS01153PROSITE:PS51686Proteomes:UP000006548RefSeq:NP_194390.2scanprosite:PS01153SMR:Q8VYM6
STRING:3702.AT4G26600.1SUPFAM:SSF53335TAIR:AT4G26600TIGRfam:TIGR00446TIGRFAMs:TIGR00446UniGene:At.28358UniProt:Q8VYM6
Coordinates (TAIR10) chr4:+:13419629..13423418
Molecular Weight (calculated) 75546.80 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.97
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD
101: DDDDDDDEDA EPLAEDFLDG SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK ELEEEARRPP DLPSLQMRIR
201: EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS
301: KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY
401: DGRELTKVLG QSSVDRVLLD APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM IPENEAVIDY ALKNRDVKLV
501: PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT
601: KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR ENAKETPKHR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)