AT4G11170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, response to ozone; LOCATED IN: mitochondrion; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G49140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6811127..6817130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126090.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1095 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSNSWR YDVFPSFRGE DVRNNFLSHL LKEFESKGIV TFRDDHIKRS HTIGHELRAA IRESKISVVL FSENYASSSW CLDELIEIMK CKEEQGLKVM 0101: PVFYKVDPSD IRKQTGKFGM SFLETCCGKT EERQHNWRRA LTDAANILGD HPQNWDNEAY KITTISKDVL EKLNATPSRD FNDLVGMEAH IAKMESLLCL 0201: ESQGVRIVGI WGPAGVGKTT IARALYNQYH ENFNLSIFME NVRESYGEAG LDDYGLKLHL QQRFLSKLLD QKDLRVRHLG AIEERLKSQK VLIILDDVDN 0301: IEQLKALAKE NQWFGNKSRI VVTTQNKQLL VSHDINHMYQ VAYPSKQEAL TIFCQHAFKQ SSPSDDLKHL AIEFTTLAGH LPLALRVLGS FMRGKGKEEW 0401: EFSLPTLKSR LDGEVEKVLK VGYDGLHDHE KDLFLHIACI FSGQHENYLK QMIIANNDTY VSFGLQVLAD KSLIQKFENG RIEMHSLLRQ LGKEVVRKQS 0501: IYEPGKRQFL MNAKETCGVL SNNTGTGTVL GISLDMCEIK EELYISEKTF EEMRNLVYLK FYMSSPIDDK MKVKLQLPEE GLSYLPQLRL LHWDAYPLEF 0601: FPSSFRPECL VELNMSHSKL KKLWSGVQPL RNLRTMNLNS SRNLEILPNL MEATKLNRLD LGWCESLVEL PSSIKNLQHL ILLEMSCCKK LEIIPTNINL 0701: PSLEVLHFRY CTRLQTFPEI STNIRLLNLI GTAITEVPPS VKYWSKIDEI CMERAKVKRL VHVPYVLEKL CLRENKELET IPRYLKYLPR LQMIDISYCI 0801: NIISLPKLPG SVSALTAVNC ESLQILHGHF RNKSIHLNFI NCLKLGQRAQ EKIHRSVYIH QSSYIADVLP GEHVPAYFSY RSTGSSIMIH SNKVDLSKFN 0901: RFKVCLVLGA GKRFEGCDIK FYKQFFCKPR EYYVPKHLDS PLLKSDHLCM CEFELMPPHP PTEWELLHPN EFLEVSFESR GGLYKCEVKE CGLQFLEPHE 1001: TSEFRYLSPH LYLGGSWIGN SSSSIEEIIH VDQEESSSDS EEIIYADQEE SSSGIEEIIH AEREGTNRRK SVMRWIKVGA RKMGLSLECL KPWTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)