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AT5G25260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G25250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17872eggNOG:COG2268eggNOG:KOG2668EMBL:AC006259
EMBL:BT023420EMBL:CP002688EnsemblPlants:AT5G25260EnsemblPlants:AT5G25260.1
entrez:832597GeneID:832597Genevisible:Q4V3D6GO:GO:0005774
GO:GO:0005901Gramene:AT5G25260.1hmmpanther:PTHR13806hmmpanther:PTHR13806:SF23
HOGENOM:HOG000217587InParanoid:Q4V3D6InterPro:IPR001107InterPro:IPR027705
KEGG:ath:AT5G25260OMA:LMINNGTPANTHER:PTHR13806PaxDb:Q4V3D6
Pfam:PF01145Pfam:Q4V3D6PhylomeDB:Q4V3D6PRIDE:Q4V3D6
PRO:PR:Q4V3D6ProteinModelPortal:Q4V3D6Proteomes:UP000006548RefSeq:NP_197908.1
STRING:3702.AT5G25260.1SUPFAM:0050593SUPFAM:SSF117892TAIR:AT5G25260
UniGene:At.30922UniProt:Q4V3D6
Coordinates (TAIR10) chr5:+:8752751..8754282
Molecular Weight (calculated) 51421.60 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.37
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKVARASQY LAITGGGIED IKLSKKSWVF PWQRCTVFDV SPVNYTFKVQ AMSAEKLPFV LPAVFTIGPR VDDTEALILY ARLISPHDKQ SNHVNELVEG
101: VIEGETRVLA ASMTMEEIFK GTKEFKKEVF DKVQLELDQF GLVIYNANVK QLVDVPGHEY FSYLGQKTQM EAANQARIDV AEAKMKGEIG AKERTGLTLQ
201: NAAKIDAESK IISMQRQGEG TKAEIKVKTE VKVFENQKEA DVAKANSELA MKKAAWTKDA KVAEVEATKA VALREAELQT QVEKMNALTR TEKLKAEFLS
301: KASVEYETKV QEANWELYNK QKQAEAVLYE KQKQAEAQKA EADATFYSKQ KEAEGLVALA SAQGTYLRTL LDAVQNDYSC LRDFLMINNG TYQEIAKTNA
401: LAVRDLQPKI SVWNHGGEQG IGGASGSGMK DIAGLYKMLP PVLDTVYEQT GMQPPAWIGT LSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)