suba logo
AT4G05460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05497.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11207eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AK227360
EMBL:AL161503EMBL:AY087774EMBL:BT003081EMBL:CP002687
EnsemblPlants:AT4G05460EnsemblPlants:AT4G05460.1entrez:825896Gene3D:3.80.10.10
GeneID:825896Genevisible:Q9M0U9GO:GO:0005634GO:GO:0016567
Gramene:AT4G05460.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF122HOGENOM:HOG000239019
InParanoid:Q9M0U9IntAct:Q9M0U9InterPro:IPR001611InterPro:IPR001810
InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT4G05460OMA:DMHNLGD
PaxDb:Q9M0U9Pfam:PF00560Pfam:PF12937Pfam:Q9M0U9
Pfscan:PS50181PhylomeDB:Q9M0U9PIR:F85068PRIDE:Q9M0U9
PRO:PR:Q9M0U9PROSITE:PS50181ProteinModelPortal:Q9M0U9Proteomes:UP000006548
RefSeq:NP_567294.1SMART:SM00256SMART:SM00367SMR:Q9M0U9
STRING:3702.AT4G05460.1SUPFAM:SSF52047TAIR:AT4G05460UniGene:At.48830
UniGene:At.66629UniPathway:UPA00143UniProt:Q9M0U9
Coordinates (TAIR10) chr4:-:2761106..2762400
Molecular Weight (calculated) 34160.20 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.35
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)