AT4G02750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1221116..1223461 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89042.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 781 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEINKFRALS RRAQQLHYTS LNGLKRRCNN AHGAANFHSL KRATQTQIQK SQTKPLLKCG DSDIKEWNVA ISSYMRTGRC NEALRVFKRM PRWSSVSYNG 101: MISGYLRNGE FELARKLFDE MPERDLVSWN VMIKGYVRNR NLGKARELFE IMPERDVCSW NTMLSGYAQN GCVDDARSVF DRMPEKNDVS WNALLSAYVQ 201: NSKMEEACML FKSRENWALV SWNCLLGGFV KKKKIVEARQ FFDSMNVRDV VSWNTIITGY AQSGKIDEAR QLFDESPVQD VFTWTAMVSG YIQNRMVEEA 301: RELFDKMPER NEVSWNAMLA GYVQGERMEM AKELFDVMPC RNVSTWNTMI TGYAQCGKIS EAKNLFDKMP KRDPVSWAAM IAGYSQSGHS FEALRLFVQM 401: EREGGRLNRS SFSSALSTCA DVVALELGKQ LHGRLVKGGY ETGCFVGNAL LLMYCKCGSI EEANDLFKEM AGKDIVSWNT MIAGYSRHGF GEVALRFFES 501: MKREGLKPDD ATMVAVLSAC SHTGLVDKGR QYFYTMTQDY GVMPNSQHYA CMVDLLGRAG LLEDAHNLMK NMPFEPDAAI WGTLLGASRV HGNTELAETA 601: ADKIFAMEPE NSGMYVLLSN LYASSGRWGD VGKLRVRMRD KGVKKVPGYS WIEIQNKTHT FSVGDEFHPE KDEIFAFLEE LDLRMKKAGY VSKTSVVLHD 701: VEEEEKERMV RYHSERLAVA YGIMRVSSGR PIRVIKNLRV CEDCHNAIKY MARITGRLII LRDNNRFHHF KDGSCSCGDY W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)