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AT4G02400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : U3 ribonucleoprotein (Utp) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5644eggNOG:KOG2172EMBL:CP002687EnsemblPlants:AT4G02400EnsemblPlants:AT4G02400.1entrez:828039GeneID:828039
GO:GO:0006364GO:GO:0019013GO:GO:0032040Gramene:AT4G02400.1hmmpanther:PTHR14150hmmpanther:PTHR14150:SF12InParanoid:F4JHI1
InterPro:IPR006709KEGG:ath:AT4G02400KO:K14567ncoils:CoilOMA:GSWKKMKPANTHER:PTHR14150PaxDb:F4JHI1
Pfam:PF04615PRIDE:F4JHI1ProteinModelPortal:F4JHI1Proteomes:UP000006548RefSeq:NP_567232.3STRING:3702.AT4G02400.1TAIR:AT4G02400
UniGene:At.26158UniGene:At.48824UniProt:F4JHI1
Coordinates (TAIR10) chr4:+:1054243..1057884
Molecular Weight (calculated) 96765.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -1.14
Length 855 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEKRKSTSK TLAKNKKRKG PHLPNSILKT IANEKRPLNS DEDDDEIDSD DENVDLYEYE EGVPEEESKK NNRYDRVDNY DYELPEDFED ENVESDDDED
101: GGNSENEEGE GDDDRHTRML QGLTGMPSAA FQEESKKRPV LYTEAYPESE FNPTRDVLEG KGLISVEDLL APLEGKPGFN DLNKRINRMQ KDTQSVVHAP
201: LPKPERERLE RKAVKGLVEK DFNKWVHLVK RNREAPTVYF NQPVNVGYST VGAIASEFQP RTEFEKKMAS VLKDNELGEA HKEDGAKLLE LNEVSMEDHI
301: KYRDHIAKMR SLLFRHELKS KRIKKIKSKT YHRLKGKDLK KSAMGALMDP EMAKEEAIKQ ETRRVEERMT LKHKNTGKWA KRMLSRGLTE RYDGTRAAIS
401: EQLQINATLS RKMNSTNDGS SSDESDDEEE LSCGSDQDTP SKLIAKAREK TLKTMEDDDV PNSGLLSLPF MARAMKKKNE EANEEAKRAF GEYKELENFG
501: GEDNPKKSAD VSGRRVFGAT SKVEAPKESK KDSDNFYDNS DSDNDMEGIE NNDLGAVGDT ASPARNTGAI TETEKCCGDV ENPASKTTFD VALFASGSWK
601: KMKGSQNAES KKAPKTRVPI SKGQDKKESR DEESEDSESE AEQMVDGILT SASKETYEIP SQAELIQRAF AGDDVVEEFE KDKQEVLNQE VPEPEKPVLV
701: PGWGQWTNVQ KKRGLPSWMV REHEDANKKR KLDLKTRKDY RLRNVIISEK VDKKADKLHT TTLPFPYTSK EVFEHSMRMP IGPEFNPATI VGALNRPEVV
801: KKAGVIIKPV KFEEVNPNEK ADDENPRSHQ KQRPKKGSKT SKGQGKNKSK LKTKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)