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AT3G60010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.715
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1-like 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 13 (SK13); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 11 (TAIR:AT4G34210.1); Has 1418 Blast hits to 1414 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 525; Fungi - 176; Plants - 537; Viruses - 11; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
BioGrid:10485DIP:DIP-31331NeggNOG:COG5201eggNOG:KOG1724EMBL:AL138647EMBL:CP002686EnsemblPlants:AT3G60010
EnsemblPlants:AT3G60010.1entrez:825171GeneID:825171Genevisible:Q9M1X5GO:GO:0005634GO:GO:0006511GO:GO:0016567
Gramene:AT3G60010.1hmmpanther:PTHR11165HOGENOM:HOG000172184InParanoid:Q9M1X5IntAct:Q9M1X5InterPro:IPR001232InterPro:IPR011333
InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT3G60010KO:K03094OMA:GCQTVADPaxDb:Q9M1X5
Pfam:PF01466Pfam:PF03931Pfam:Q9M1X5PhylomeDB:Q9M1X5PIR:T47825PIRSF:PIRSF028729PRIDE:Q9M1X5
PRO:PR:Q9M1X5ProteinModelPortal:Q9M1X5Proteomes:UP000006548RefSeq:NP_567090.1SMART:SM00512SMR:Q9M1X5STRING:3702.AT3G60010.1
SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G60010tair10-symbols:ASK13tair10-symbols:SK13UniGene:At.65295UniPathway:UPA00143
UniProt:Q9M1X5
Coordinates (TAIR10) chr3:-:22163094..22163558
Molecular Weight (calculated) 17234.50 Da
IEP (calculated) 4.07
GRAVY (calculated) -0.22
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKMVMLLSS DGESFQVEEA VAVQSQTIAH MIEDDCVANG VPIANVTGVI LSKVIEYCKK HVVSDSPTEE SKDELKKWDA EFMKALEQSS TLFDVMLAAN
101: YLNIKDLLDL GCQTVADMIT GKKPDEIRAL LGIENDFTPE EEEEIRKENQ WAFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)