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AT3G59550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rad21/Rec8-like family protein
Curator
Summary (TAIR10)
Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.
Computational
Description (TAIR10)
SYN3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis, megagametogenesis, pollen development; LOCATED IN: nucleolus, nucleus, nuclear cohesin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT4G05360.1); Has 1082 Blast hits to 944 proteins in 221 species: Archae - 0; Bacteria - 42; Metazoa - 397; Fungi - 305; Plants - 228; Viruses - 4; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRB4eggNOG:KOG1213EMBL:AF281155EMBL:AF400128
EMBL:AL138659EMBL:CP002686EnsemblPlants:AT3G59550EnsemblPlants:AT3G59550.1
entrez:825124Gene3D:1.10.10.580GeneID:825124Genevisible:Q9FQ19
GO:GO:0000798GO:GO:0005634GO:GO:0005730GO:GO:0007059
GO:GO:0007067GO:GO:0009555GO:GO:0009561GO:GO:0051301
hmmpanther:PTHR12585hmmpanther:PTHR12585:SF36HOGENOM:HOG000090294InParanoid:Q9FQ19
InterPro:IPR006909InterPro:IPR006910InterPro:IPR011991InterPro:IPR023093
iPTMnet:Q9FQ19KEGG:ath:AT3G59550KO:K06670OMA:QAARMFF
PaxDb:Q9FQ19Pfam:PF04824Pfam:PF04825Pfam:Q9FQ19
PhylomeDB:Q9FQ19PIR:T49296PRIDE:Q9FQ19PRO:PR:Q9FQ19
ProteinModelPortal:Q9FQ19Proteomes:UP000006548Reactome:R-ATH-2468052Reactome:R-ATH-2470946
RefSeq:NP_191514.1SMR:Q9FQ19STRING:3702.AT3G59550.1SUPFAM:SSF46785
TAIR:AT3G59550tair10-symbols:ATRAD21.2tair10-symbols:ATSYN3tair10-symbols:SYN3
UniGene:At.1119UniProt:Q9FQ19
Coordinates (TAIR10) chr3:+:21997262..22000496
Molecular Weight (calculated) 77145.20 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.74
Length 693 amino acids
Sequence (TAIR10)
(BLAST)
001: MFYSHTLLAR KGPLGTVWCA AHVHQRLKKS QYTSINIPDT VDNIMFPEVP LALRTSSHLL VGVVRIYSKK VDYLYNDWNL LNTWVAKAFV STQVNLPEDA
101: RQAPPESVTL PQALNLDEFD LEDDTLDMEF DNHTRSEEDI TLTDQIPTGI DPYVAVTFDE DIISESIPMD VDQSTEPVSR HTGEIDVETA HETGPDNEPR
201: DSNIAFDTGT YSPRNVTEEF TEVQDPRQSN LTEERIPNSE RNDATSPGTV PEIERMRDAA HDLSPTSHPS FAAQQQDVRV ERTESLDETL NEKEPTIPSI
301: DEEMLNSGRH SAFELRSGSP GSAAGSEEER ADFVHPSPQL VLQPSPPPQP QRRARKRKNF DGVTVLTNKN ISERLKDPSD TLRKRKKMPS SKLKFWRMNN
401: QSRKDQNFNE PLFTGFSDDL RNVFEKDYVA SKPHLAVSDE TLPEPASVSP TREAEVEINP VSPIPDSTNP DSTVQLSPAQ QTEDVLDSAG PRPAHAESVA
501: TEAQSPRTFD NDDMGIEHLR DGGFPVYMPS PPPRSSPFRT DDFTTQSGNW ETESYRTEPS TSTVPEDLPG QRNLGLSPVS ERTDEELYFL EVGGNSPVGT
601: PASQDSAALT GRARALAQYL KQRSSSSPTT SSHPSGDLSL SEILAGKTRK LAARMFFETL VLKSRGLIDM QQDRPYGDIA LKLMPALFSK VQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)