AT3G59290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT2G43160.1); Has 10809 Blast hits to 8703 proteins in 640 species: Archae - 23; Bacteria - 783; Metazoa - 4592; Fungi - 2600; Plants - 971; Viruses - 59; Other Eukaryotes - 1781 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21912796..21917474 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109700.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1024 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKKAFGQTVR DLKRGVNKKV LKVPGIEQKV LDATSNESWG PHGSLLADIA HASRNYHEYQ ITMGVLWKRL SDSGKNWRHV YKALTVLEYM VGHGSERVIE 0101: EVKEHAYQIT TLSGFQYIDS SGKDQGSNVR KKAQSLVALV NDKERITEVR EKAAANRDKY HNSMHRPSGG YGDKYDYEGR YGDRDEGRSS YGKEREYGYR 0201: DDDRNSRDGD RYSRDSEDRY GRDGNTDDEY RGRSRSVDNY NGSRGRSSDR ERPIEDDGQS SSRDSGAPAD DHSQDGRGGL ERKFSEQNIG AAPPSYEEAV 0301: SESRSPVYSE RDGGETPQVA PPGAAASPLA ENISVDNKAA DFVNESSPQQ VEAFDEFDPR GSVSAACAPT AGASVPAPIP PTVVSTPAPP ASINAEMDLL 0401: GSLSDVFSPN PLAIVTSDST SVETNGQANT GLAPSFSTSQ SSTQPFDDPF GDSPFKAITS ADTETSQHQS FGVPFQPTPP TSNPNNEHNF GFGEAFSAVT 0501: DSEPGVQNMQ APPNLSVFPQ EQFDTSQSEI DILAGILPPS GPPVSLSPQP DSTMPTSQFH PNGNSYESYH HQAAPTDLNM QGQTPFGQAS QQFNMVSHSQ 0601: NHHEGMQFNN GGFTQQPGYA GPATSQPPQY TPGVSSHPPS ESFPHQPGSA TSASSQTPYA TTPNVSAGQF DGGSFMTQQP YGVTQQVHVV PSHIPQRTQS 0701: GPVAAFGNNN NIVGDMHQPG STPSSSSQTP YPTTPNAPSG QFDGGNFMTQ QPYGVIPQVH GVPSHIPQRT QSGPVAAHGN SNNVVGDMFS PAGLSSLETS 0801: ASQPSLTPLT GAIEIVPQNQ KKFEPKSTIW ADTLSRGLVN FNISGPKTNP LADIGVDFEA INRKEKRLEK PTITQQQVTS TINMGKAMGS GTGLGRAGAG 0901: AMRPPTNSMV GSSMPTGMNV GGYGGMNQHQ PIGMNQNHPM GMNQNLSMGM NQNYPMGMNQ NYPMGMGMNM NMGGYGQGYP MQPQQGMGMA PPGAPQGMTG 1001: AYNPMMGQGG YNPQQQQPYG GGYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)