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AT3G55110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.643
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: white-brown complex homolog 19 (TAIR:AT3G55130.1); Has 385599 Blast hits to 351876 proteins in 4105 species: Archae - 7169; Bacteria - 305821; Metazoa - 8275; Fungi - 6295; Plants - 5429; Viruses - 12; Other Eukaryotes - 52598 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1131eggNOG:KOG0061EMBL:AK228550EMBL:AL132970EMBL:CP002686EnsemblPlants:AT3G55110EnsemblPlants:AT3G55110.1
entrez:824677Gene3D:3.40.50.300GeneID:824677Genevisible:Q9M2V5GO:GO:0005524GO:GO:0005886GO:GO:0016021
GO:GO:0042626GO:GO:0055085Gramene:AT3G55110.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF258HOGENOM:HOG000238446InParanoid:Q9M2V5
InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT3G55110OMA:NWIRTPE
PaxDb:Q9M2V5Pfam:PF00005Pfam:PF01061Pfam:Q9M2V5Pfscan:PS50893PhylomeDB:Q9M2V5PIR:T47650
PRIDE:Q9M2V5PRO:PR:Q9M2V5PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9M2V5Proteomes:UP000006548RefSeq:NP_191071.1
scanprosite:PS00211SMART:SM00382SMR:Q9M2V5STRING:3702.AT3G55110.1SUPFAM:SSF52540TAIR:AT3G55110TMHMM:TMhelix
UniGene:At.35051UniProt:Q9M2V5
Coordinates (TAIR10) chr3:-:20424766..20426892
Molecular Weight (calculated) 78704.60 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.12
Length 708 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRVSAEILD ISHTGGNESP TLGELLKDFN DSGRKKYPGE NAPTQHILDL APAAETRSVP FLLSFNNLSY NVVLRRRFDF SRRKTASVKT LLDDITGEAR
101: DGEILAVLGG SGAGKSTLID ALAGRVAEDS LKGTVTLNGE KVLQSRLLKV ISAYVMQDDL LFPMLTVKET LMFASEFRLP RSLPKSKKME RVETLIDQLG
201: LRNAADTVIG DEGHRGVSGG ERRRVSIGID IIHDPILLFL DEPTSGLDST NAFMVVQVLK RIAQSGSVVI MSIHQPSARI IGLLDRLIIL SHGKSVFNGS
301: PVSLPSFFSS FGRPIPEKEN ITEFALDVIR ELEGSSEGTR DLVEFNEKWQ QNQTARATTQ SRVSLKEAIA ASVSRGKLVS GSSGANPISM ETVSSYANPP
401: LAETFILAKR YIKNWIRTPE LIGMRIGTVM VTGLLLATVY WRLDNTPRGA QERMGFFAFG MSTMFYCCAD NIPVFIQERY IFLRETTHNA YRTSSYVISH
501: ALVSLPQLLA LSIAFAATTF WTVGLSGGLE SFFYYCLIIY AAFWSGSSIV TFISGLIPNV MMSYMVTIAY LSYCLLLGGF YINRDRIPLY WIWFHYISLL
601: KYPYEAVLIN EFDDPSRCFV KGVQVFDGTL LAEVSHVMKV KLLDTLSGSL GTKITESTCL RTGPDLLMQQ GITQLSKWDC LWITLAWGLF FRILFYLSLL
701: FGSKNKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)