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AT3G52150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQWCeggNOG:ENOG410YC5SEMBL:AY070427EMBL:AY133746
EMBL:CP002686EnsemblPlants:AT3G52150EnsemblPlants:AT3G52150.1EnsemblPlants:AT3G52150.2
entrez:824379Gene3D:3.30.70.330GeneID:824379GO:GO:0000166
GO:GO:0003676GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009941Gramene:AT3G52150.1Gramene:AT3G52150.2
hmmpanther:PTHR24012InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT3G52150
KO:K13126OMA:VMYDKYTPfam:PF00076Pfscan:PS50102
PhylomeDB:Q8VYM4PRO:PR:Q8VYM4PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_001030841.1RefSeq:NP_566958.3SMART:SM00360SMR:Q8VYM4
STRING:3702.AT3G52150.1SUPFAM:SSF54928TAIR:AT3G52150UniGene:At.3215
UniProt:Q8VYM4
Coordinates (TAIR10) chr3:+:19342074..19343090
Molecular Weight (calculated) 27749.90 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.26
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFLTNVVS IKPTIFSFQS ESFTPLHTRV NVFSSKPFPS LAGTFSRSSR TRFIPYAVTE TEEKPAALDP SSEAARRVYI GNIPRTVTNE QLTKLVEEHG
101: AVEKVQVMYD KYSGRSRRFG FATMKSVEDA NAVVEKLNGN TVEGREIKVN ITEKPIASSP DLSVLQSEDS AFVDSPYKVY VGNLAKTVTK EMLENLFSEK
201: GKVVSAKVSR VPGTSKSTGF GFVTFSSEED VEAAIVALNN SLLEGQKIRV NKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)