AT3G50830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cold-regulated 413-plasma membrane 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cold-regulated 413-plasma membrane 2 (COR413-PM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 158 Blast hits to 155 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18894109..18895355 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22755.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.72 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 203 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRMDYLAMK TDDVDTVALV NSDMEELKVA AKKLFSDVSK LGGLGFGVSF LKFLASFAAI YLLILDRTNW KTKMLTSLLI PYIFLSLPSV IFNFLSGDVG 101: KWIAFVAVVL RLFFPKHFPD WLEMPGSLIL LLVVSPHFLA HHIRGTWIGT VISLFIGCYL LQEHIRASGG FRNSFTQPRG VSNTLGIILL LVYPVWALIV 201: RVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)