AT3G11780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT5G06480.1); Has 235 Blast hits to 235 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 95; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3724326..3725476 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 16805.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||
| Length | 153 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKFTGFSSL AISYFLLVST IVAATDVHYC DNNEEYEVKV QGVDITPYPI ARGEPATFRI SANTDTEISS GKLVIEVSYF GWHIHSETHD LCDETSCPVA 101: IGDFLVAHSQ VLPGYTPPGS YSLKMKMLDG RKKELTCIKF SFDIGFGSSV ADM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)