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AT3G49240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1796 (emb1796); FUNCTIONS IN: ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: glutamine-rich protein 23 (TAIR:AT1G10270.1); Has 36492 Blast hits to 13612 proteins in 345 species: Archae - 36; Bacteria - 141; Metazoa - 341; Fungi - 345; Plants - 34345; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).
Protein Annotations
BioGrid:9403eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132956EMBL:AY099591EMBL:AY864352EMBL:BT008786
EMBL:CP002686EnsemblPlants:AT3G49240EnsemblPlants:AT3G49240.1entrez:824085Gene3D:1.25.40.10GeneID:824085Genevisible:Q9M3A8
GO:GO:0005524GO:GO:0005739GO:GO:0009507GO:GO:0009793Gramene:AT3G49240.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF237
HOGENOM:HOG000243786InParanoid:Q9M3A8IntAct:Q9M3A8InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G49240ncoils:Coil
OMA:LHRFVTQPaxDb:Q9M3A8Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9M3A8
Pfscan:PS51375PhylomeDB:Q9M3A8PIR:T45829PRIDE:Q9M3A8PRO:PR:Q9M3A8PROSITE:PS51375ProteinModelPortal:Q9M3A8
Proteomes:UP000006548RefSeq:NP_190493.1SMR:Q9M3A8STRING:3702.AT3G49240.1SUPFAM:SSF48452SwissPalm:Q9M3A8TAIR:AT3G49240
tair10-symbols:emb1796TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.43791UniProt:Q9M3A8
Coordinates (TAIR10) chr3:+:18256086..18257975
Molecular Weight (calculated) 71296.90 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.43
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)