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AT3G28920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 34
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 34 (HB34); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT5G39760.1); Has 606 Blast hits to 597 proteins in 84 species: Archae - 0; Bacteria - 8; Metazoa - 33; Fungi - 36; Plants - 501; Viruses - 5; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW64eggNOG:ENOG410YKTXEMBL:AP002049EMBL:AY093171EMBL:AY128820EMBL:CP002686EnsemblPlants:AT3G28920
EnsemblPlants:AT3G28920.1entrez:822527Gene3D:1.10.10.60GeneID:822527Genevisible:Q9LHF0GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0042803GO:GO:0044212GO:GO:0046872Gramene:AT3G28920.1hmmpanther:PTHR31948
hmmpanther:PTHR31948:SF8HOGENOM:HOG000238105InParanoid:Q9LHF0IntAct:Q9LHF0InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057
iPTMnet:Q9LHF0KEGG:ath:AT3G28920OMA:HESSMNDPaxDb:Q9LHF0Pfam:PF04770Pfam:Q9LHF0Pfscan:PS51523
PhylomeDB:Q9LHF0PRIDE:Q9LHF0PRO:PR:Q9LHF0ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9LHF0Proteomes:UP000006548
RefSeq:NP_189534.1SMR:Q9LHF0STRING:3702.AT3G28920.1SUPFAM:SSF46689TAIR:AT3G28920tair10-symbols:AtHB34tair10-symbols:HB34
tair10-symbols:ZHD9TIGRfam:TIGR01565TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.19633UniGene:At.74192
UniProt:Q9LHF0
Coordinates (TAIR10) chr3:-:10940598..10941536
Molecular Weight (calculated) 33561.80 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.86
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)