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AT3G28500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G40040.1); Has 1217 Blast hits to 1216 proteins in 338 species: Archae - 72; Bacteria - 1; Metazoa - 371; Fungi - 279; Plants - 263; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Protein Annotations
BioGrid:7809eggNOG:COG2058eggNOG:KOG3449EMBL:AP002059
EMBL:AY086773EMBL:BT003971EMBL:BT005087EMBL:CP002686
EnsemblPlants:AT3G28500EnsemblPlants:AT3G28500.1entrez:822480GeneID:822480
Genevisible:Q9LH85GO:GO:0003735GO:GO:0005829GO:GO:0005886
GO:GO:0006414GO:GO:0022626Gramene:AT3G28500.1HAMAP:MF_01478
hmmpanther:PTHR21141HOGENOM:HOG000229897InParanoid:Q9LH85InterPro:IPR027534
iPTMnet:Q9LH85KEGG:ath:AT3G28500KO:K02943OMA:AEIDETK
PaxDb:Q9LH85Pfam:PF00428Pfam:Q9LH85PhylomeDB:Q9LH85
PRIDE:Q9LH85PRO:PR:Q9LH85ProteinModelPortal:Q9LH85Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_189491.1SMR:Q9LH85
STRING:3702.AT3G28500.1TAIR:AT3G28500UniGene:At.6781UniProt:Q9LH85
Coordinates (TAIR10) chr3:+:10682204..10682551
Molecular Weight (calculated) 11736.00 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.02
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV
101: KDESSDDAGM MGLFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)