AT3G27325.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydrolases, acting on ester bonds | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); Has 338 Blast hits to 334 proteins in 168 species: Archae - 0; Bacteria - 16; Metazoa - 103; Fungi - 147; Plants - 45; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10096224..10102087 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120382.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||
| Length | 1085 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRDVRFAMSI RPRLRIVGVL ILAAWIGLVA LFGLLKPIKN GCTMTYMYPT YIPISVTDDT TPGRYGLYLY HEGWRKIDFK EHLKKLSGVP VLFIPGNAGS 0101: YKQVRSVAAE SDRAFQGGPF ERTFYQEASL LRGGGADTES VDYDLPSQYS NRLDWFAVDL EGEHSAMDGR ILEEHTEYVV YAIHRILDQY KESHDTRERE 0201: GAAASSKLPH DVILVGHSMG GFVARAAAVH PRLRKSAVQT ILTLSSPHQS PPLALQPSLG HYFAQVNREW KKGYEVQTSP GGNYVSDPLL SGVVVVSISG 0301: GYNDYQVRSK LESLDGIVPS SHGFMISSTS MTNVWLSMEH QAILWCNQLV VQVSHTLLSM VDSKTNQPFS DTDKRLWVLT RMLQSALAQS FNGMTPMEVS 0401: HELPILASKG STCFLDWRDD ALDRDLYIQT STVTILAMDG RRRWLDIDLL GSNGKNHFIF VTNLVPCSGV RLHLWPEKEK SNSNLPVCER VLEVTSKMVL 0501: IPAGPAPKQS EPGSQTEQAP PSAVLKLGPE DMRGFRFLTI SVAPREAVSG KPPVAVSMAV GQFFNPGDGA VEVSSQSMLL STYWAKEIFL KEDHPLAYNL 0601: SFSTSLGLLP ATLSLKTTGC GIKTFGLPDG ETGDLDKDKL CKLRCFPPVA LAWDSASGLH VFANLYSETI VIDSSPALWS SQSSEKTTVM LLVDPHCSYT 0701: ASVHVSAPAM SSRFVLLYGP QIVGFSFAVI MFALMRQANQ WDNKLSVPPL LSAVEYNLEM PSPFLLLAVL PLISSLFYSF LMGQPIPPLT SFTVVSLICY 0801: LLANAFISVL TIVSKFPFQA SALVHTTVKS RCQALERNYS LAFLHWFSIL SSSFFCLKAI RILKLNTTIL MTLIAVTLVS FVHPALGLFV LLASHALCCH 0901: NSMCCIMMAS KRKESLDQKN EAERKTRHPS SREDPVSGDL SEKSFVETQA DIFNHRHGLL ILHLLAALMF VPSLAAWFQR IGTGQSFPWF ADSALCVGVI 1001: FHGILNSRPE SSILRSFPFF SGHQIRPHHI YLLAGYYCFF SGLELAPYKV FYAIASLGYI SLTLKISQVN KNDLRFRTKS RIHRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)