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AT3G14730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 39287 Blast hits to 13376 proteins in 233 species: Archae - 0; Bacteria - 3; Metazoa - 52; Fungi - 106; Plants - 38683; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB023038EMBL:CP002686
EnsemblPlants:AT3G14730EnsemblPlants:AT3G14730.1entrez:820701Gene3D:1.25.40.10
GeneID:820701Genevisible:Q9LUC2Gramene:AT3G14730.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF690HOGENOM:HOG000237569InParanoid:Q9LUC2InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G14730OMA:LEPEHCGPaxDb:Q9LUC2
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9LUC2
Pfscan:PS51375PhylomeDB:Q9LUC2PRIDE:Q9LUC2PRO:PR:Q9LUC2
PROSITE:PS51375ProteinModelPortal:Q9LUC2Proteomes:UP000006548RefSeq:NP_188091.1
SMR:Q9LUC2STRING:3702.AT3G14730.1SUPFAM:SSF48452TAIR:AT3G14730
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65089UniProt:Q9LUC2
Coordinates (TAIR10) chr3:-:4949385..4951346
Molecular Weight (calculated) 72715.20 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.10
Length 653 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVSFLRIEI QNCSAGILRF LPRNPDLFAA IKPSSALASL YSTVSGQIEE NPKRYEHHNV ATCIATLQRC AQRKDYVSGQ QIHGFMVRKG FLDDSPRAGT
101: SLVNMYAKCG LMRRAVLVFG GSERDVFGYN ALISGFVVNG SPLDAMETYR EMRANGILPD KYTFPSLLKG SDAMELSDVK KVHGLAFKLG FDSDCYVGSG
201: LVTSYSKFMS VEDAQKVFDE LPDRDDSVLW NALVNGYSQI FRFEDALLVF SKMREEGVGV SRHTITSVLS AFTVSGDIDN GRSIHGLAVK TGSGSDIVVS
301: NALIDMYGKS KWLEEANSIF EAMDERDLFT WNSVLCVHDY CGDHDGTLAL FERMLCSGIR PDIVTLTTVL PTCGRLASLR QGREIHGYMI VSGLLNRKSS
401: NEFIHNSLMD MYVKCGDLRD ARMVFDSMRV KDSASWNIMI NGYGVQSCGE LALDMFSCMC RAGVKPDEIT FVGLLQACSH SGFLNEGRNF LAQMETVYNI
501: LPTSDHYACV IDMLGRADKL EEAYELAISK PICDNPVVWR SILSSCRLHG NKDLALVAGK RLHELEPEHC GGYVLMSNVY VEAGKYEEVL DVRDAMRQQN
601: VKKTPGCSWI VLKNGVHTFF TGNQTHPEFK SIHDWLSLVI SHMHGHEYMT VDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)