AT3G03050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.500 plasma membrane 0.500 ASURE: golgi,plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase-like D3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase-like D3 (CSLD3); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, plant-type cell wall biogenesis, response to cold, polysaccharide biosynthetic process; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3102 Blast hits to 2806 proteins in 639 species: Archae - 29; Bacteria - 1146; Metazoa - 1; Fungi - 6; Plants - 1829; Viruses - 5; Other Eukaryotes - 86 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:687873..691629 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128596.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1145 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASNNHFMNS RSNLSTNSDA AEAERHQQPV SNSVTFARRT PSGRYVNYSR DDLDSELGSV DLTGYSVHIP PTPDNQPMDP SISQKVEEQY VSNSLFTGGF 0101: NSVTRAHLME KVIDTETSHP QMAGAKGSSC AVPGCDVKVM SDERGQDLLP CECDFKICRD CFMDAVKTGG MCPGCKEPYR NTDLADFADN NKQQRPMLPP 0201: PAGGSKMDRR LSLMKSTKSG LMRSQTGDFD HNRWLFETSG TYGFGNAFWT KDGNFGSDKD GNGHGMGPQD LMSRPWRPLT RKLQIPAAVI SPYRLLILIR 0301: IVVLALFLMW RIKHKNPDAI WLWGMSVVCE LWFALSWLLD QLPKLCPINR ATDLNVLKEK FETPTPSNPT GKSDLPGLDM FVSTADPEKE PPLVTSNTIL 0401: SILAADYPVE KLACYVSDDG GALLTFEAMA EAASFANMWV PFCRKHNIEP RNPDSYFSLK RDPYKNKVKA DFVKDRRRVK REYDEFKVRI NSLPDSIRRR 0501: SDAYHAREEI KAMKLQRQNR DEEIVEPVKI PKATWMADGT HWPGTWINSG PDHSRSDHAG IIQVMLKPPS DEPLHGVSEG FLDLTDVDIR LPLLVYVSRE 0601: KRPGYDHNKK AGAMNALVRA SAIMSNGPFI LNLDCDHYIY NSQALREGMC FMMDRGGDRL CYVQFPQRFE GIDPSDRYAN HNTVFFDVNM RALDGLMGPV 0701: YVGTGCLFRR IALYGFDPPR AKEHHPGFCS CCFSRKKKKS RVPEENRSLR MGGDSDDDEE MNLSLVPKKF GNSTFLIDSI PVAEFQGRPL ADHPAVQNGR 0801: PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW IYGSVTEDVV TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS 0901: RNNAFFASPR MKILQRIAYL NVGIYPFTSF FLIVYCFLPA LSLFSGQFIV QTLNVTFLVY LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA 1001: HLAAVIQGLL KVVAGIEISF TLTSKSGGED VDDEFADLYI VKWTSLMIPP ITIMMVNLIA IAVGFSRTIY SVIPQWSKLI GGVFFSFWVL AHLYPFAKGL 1101: MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGSTQIGG SFTFP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)