suba logo
AT2G44520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome c oxidase 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytochrome c oxidase 10 (COX10); FUNCTIONS IN: protoheme IX farnesyltransferase activity, prenyltransferase activity; INVOLVED IN: heme o biosynthetic process, heme biosynthetic process; LOCATED IN: integral to membrane, mitochondrial membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protohaem IX farnesyltransferase, mitochondria (InterPro:IPR016315), Protohaem IX farnesyltransferase (InterPro:IPR006369), UbiA prenyltransferase (InterPro:IPR000537); Has 7990 Blast hits to 7990 proteins in 1845 species: Archae - 160; Bacteria - 4430; Metazoa - 177; Fungi - 179; Plants - 66; Viruses - 0; Other Eukaryotes - 2978 (source: NCBI BLink).
Protein Annotations
EC:2.5.1.-eggNOG:COG0109eggNOG:KOG1380EMBL:AC003672
EMBL:AC004521EMBL:AY045952EMBL:AY114016EMBL:CP002685
EnsemblPlants:AT2G44520EnsemblPlants:AT2G44520.1entrez:819059GeneID:819059
Genevisible:O64886GO:GO:0005743GO:GO:0008495GO:GO:0016021
GO:GO:0048034Gramene:AT2G44520.1gramene_pathway:1.9.3.1gramene_pathway:PWY-3781
HAMAP:MF_00154hmmpanther:PTHR11048hmmpanther:PTHR11048:SF3HOGENOM:HOG000006000
InParanoid:O64886InterPro:IPR000537InterPro:IPR006369InterPro:IPR016315
KEGG:00130+2.5.1.-KEGG:00270+2.5.1.-KEGG:00361+2.5.1.-KEGG:00380+2.5.1.-
KEGG:00403+2.5.1.-KEGG:00860+2.5.1.-KEGG:00920+2.5.1.-KEGG:ath:AT2G44520
KO:K02257OMA:AGMWLLHPaxDb:O64886Pfam:O64886
Pfam:PF01040PhylomeDB:O64886PIR:E84879PIR:T01579
PIRSF:PIRSF001773PRIDE:O64886PRO:PR:O64886ProteinModelPortal:O64886
Proteomes:UP000006548Reactome:R-ATH-189451RefSeq:NP_566019.1STRING:3702.AT2G44520.1
TAIR:AT2G44520tair10-symbols:COX10TIGRfam:TIGR01473TIGRFAMs:TIGR01473
TMHMM:TMhelixUniGene:At.24738UniProt:O64886
Coordinates (TAIR10) chr2:+:18379660..18381731
Molecular Weight (calculated) 46477.50 Da
IEP (calculated) 10.22
GRAVY (calculated) 0.27
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRRSVVYRF SSRISVSSSL PNPRLIPWSR ELCAVNSFSQ PPVSTESTAK LGITGVRSDA NRVFATATAA ATATATTGEI SSRVAALAGL GHHYARCYWE
101: LSKAKLSMLV VATSGTGYIL GTGNAAISFP GLCYTCAGTM MIAASANSLN QIFEISNDSK MKRTMLRPLP SGRISVPHAV AWATIAGASG ACLLASKTNM
201: LAAGLASANL VLYAFVYTPL KQLHPINTWV GAVVGAIPPL LGWAAASGQI SYNSMILPAA LYFWQIPHFM ALAHLCRNDY AAGGYKMLSL FDPSGKRIAA
301: VALRNCFYMI PLGFIAYDWG LTSSWFCLES TLLTLAIAAT AFSFYRDRTM HKARKMFHAS LLFLPVFMSG LLLHRVSNDN QQQLVEEAGL TNSVSGEVKT
401: QRRKKRVAQP PVAYASAAPF PFLPAPSFYS P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)