suba logo
AT2G43870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G59850.1); Has 4109 Blast hits to 4094 proteins in 490 species: Archae - 4; Bacteria - 1205; Metazoa - 14; Fungi - 1270; Plants - 1494; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43870-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IJFS
EMBL:AC002333EMBL:CP002685EMBL:DQ446620EnsemblPlants:AT2G43870
EnsemblPlants:AT2G43870.1entrez:818991Gene3D:2.160.20.10GeneID:818991
GO:GO:0004650GO:GO:0005576GO:GO:0005975GO:GO:0071555
Gramene:AT2G43870.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF2InterPro:IPR000743
InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT2G43870
OMA:NEDYWIFPfam:PF00295PhylomeDB:O22817PIR:E84871
PROSITE:PS00502Proteomes:UP000006548RefSeq:NP_181915.1scanprosite:PS00502
SMART:SM00710SMR:O22817SUPFAM:SSF51126TAIR:AT2G43870
UniGene:At.53114UniProt:O22817
Coordinates (TAIR10) chr2:-:18166615..18168264
Molecular Weight (calculated) 40812.70 Da
IEP (calculated) 8.28
GRAVY (calculated) 0.03
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLVLFVF FFISSCSAQS YNVLSFGAKP DGKTDATKAF MAVWQTACAS SRPVTIVVPK GRFLLRSVTF DGSKCKPKPV TFRIDGTLVA PADYRVIGNE
101: DYWIFFQHLD GITVYGGVLD ARGASLWDCK KSGKNCPSGA TTIGFQSSSN VVVSGLTSLN SQMFHVVING CNNVKLQGVK VLAAGNSPNT DGIHVQSSSS
201: VSIFNTKIST GDDCVSIGPG TNGLWIENVA CGPGHGISIG SLGKDSVESG VQNVTVKTVT FTGTDNGVRI KSWARPSSGF AKNIRFQHCV MNNVENPIII
301: DQNYCPDHDC PRQVSGIKIS DVLFVDIHGT SATEVGVKLD CSSKKPCTGI RLEDVKLTYQ NKPAASACTH AGGIEAGFFQ PNCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)