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AT2G43610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24012629 (2013): nucleus
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chitinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43620.1); Has 3095 Blast hits to 2792 proteins in 589 species: Archae - 0; Bacteria - 708; Metazoa - 34; Fungi - 309; Plants - 1802; Viruses - 51; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43610-MONOMERCAZy:CBM18CAZy:GH19EC:3.2.1.14eggNOG:COG3979eggNOG:KOG4742EMBL:AC002333
EMBL:AY072357EMBL:AY114724EMBL:CP002685EnsemblPlants:AT2G43610EnsemblPlants:AT2G43610.1entrez:818963Gene3D:3.30.60.10
GeneID:818963Genevisible:O22842GO:GO:0000272GO:GO:0004568GO:GO:0005886GO:GO:0006032GO:GO:0006952
GO:GO:0008061GO:GO:0016998Gramene:AT2G43610.1hmmpanther:PTHR22595hmmpanther:PTHR22595:SF37HOGENOM:HOG000231411InParanoid:O22842
InterPro:IPR000726InterPro:IPR001002InterPro:IPR016283InterPro:IPR018371InterPro:IPR023346KEGG:00520+3.2.1.14KEGG:ath:AT2G43610
KO:K01183OMA:CSPSTTYPaxDb:O22842Pfam:PF00182Pfam:PF00187Pfscan:PS50941PhylomeDB:O22842
PIR:C84868PIRSF:PIRSF001060PRIDE:O22842ProDom:PD000609PROSITE:PS00026PROSITE:PS50941ProteinModelPortal:O22842
Proteomes:UP000006548RefSeq:NP_181889.1scanprosite:PS00026SMART:SM00270SMR:O22842STRING:3702.AT2G43610.1SUPFAM:SSF53955
SUPFAM:SSF57016SwissPalm:O22842TAIR:AT2G43610TMHMM:TMhelixUniGene:At.36871UniProt:O22842
Coordinates (TAIR10) chr2:-:18088058..18089184
Molecular Weight (calculated) 30001.10 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.17
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQNAILKK ALIIFLFTLT IMTGTAFSQN CGTNGCKGNM CCSRWGYCGT TKAYCGTGCQ SGPCNSKPKP TPTPSGSGGL NAGPRGTIAS VITPAFFNSI
101: MSKVGSGCPA KGFYTRQAFI AAAESFAAYK GTVAKREIAA MLAQFSHESG SFCYKEEIAR GRYCSPSTTY PCQPGKNYYG RGPIQITWNY NYGAAGKFLG
201: LPLLKDPDMV ARSPTVAFQC AMWFWNKNVR PVLSQGFGAT TRRINGGECN GGRPAAVQSR VNHYLDFCKK LGVTPGTNLS C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)