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AT2G42430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lateral organ boundaries-domain 16
Curator
Summary (TAIR10)
LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).
Computational
Description (TAIR10)
lateral organ boundaries-domain 16 (LBD16); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1); Has 917 Blast hits to 912 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 917; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4180eggNOG:ENOG410IWZ1eggNOG:ENOG410YA3NEMBL:AB473851
EMBL:AC005956EMBL:AF345339EMBL:AF410334EMBL:AF447890
EMBL:AK230268EMBL:BT000866EMBL:CP002685EnsemblPlants:AT2G42430
EnsemblPlants:AT2G42430.1entrez:818843GeneID:818843Genevisible:Q9SLB7
GO:GO:0005634GO:GO:0010311Gramene:AT2G42430.1hmmpanther:PTHR31529
hmmpanther:PTHR31529:SF10HOGENOM:HOG000237548InParanoid:Q9SLB7InterPro:IPR004883
KEGG:ath:AT2G42430KO:K13944ncoils:CoilOMA:HQPYYGH
PaxDb:Q9SLB7Pfam:PF03195Pfam:Q9SLB7Pfscan:PS50891
PhylomeDB:Q9SLB7PIR:G84853PRIDE:Q9SLB7PRO:PR:Q9SLB7
PROSITE:PS50891Proteomes:UP000006548RefSeq:NP_565973.1STRING:3702.AT2G42430.1
TAIR:AT2G42430tair10-symbols:ASL18tair10-symbols:LBD16UniGene:At.13375
UniProt:Q9SLB7
Coordinates (TAIR10) chr2:+:17663668..17665153
Molecular Weight (calculated) 26466.90 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.37
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)