AT2G14960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.469 cytosol 0.277 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GH3.1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1628 Blast hits to 1412 proteins in 230 species: Archae - 1; Bacteria - 595; Metazoa - 55; Fungi - 2; Plants - 676; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:6451659..6453670 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66738.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 590 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVDSNLSSP LGPPACEKDA KALRFIEEMT RNADTVQENL LAEILARNAD TEYLRRFNLC GATDRDTFKT KIPVITYEDL QPEIQRIADG DRSPILSAHP 101: ISEFLTSSGT SAGERKLMPT IKEELDRRQL LYSLLMPVMN LYVPGLDKGK GMYFLFVKSE TKTPGGLPAR PVLTSYYKSE HFRSRPYDPY NVYTSPNEAI 201: LCPDSFQSMY TQMLCGLLDR LSVLRVGAVF ASGLLRAIRF LQLHWSRFAH DIELGCLDSE ITDPSIRQCM SGILKPDPVL AEFIRRECKS DNWEKIITRI 301: WPNTKYLDVI VTGAMAQYIP TLEYYSGGLP MACTMYASSE CYFGLNLNPM SKPSEVSYTI MPNMAYFEFI PLGGTKAVEL VDVNIGKEYE LVVTTYAGLC 401: RYRVGDILRV TGFHNSAPQF HFVRRKNVLL SIDSDKTDES ELQKAVENAS SILHEECGSR VAEYTSYADT STIPGHYVLY WELLVRDGAR QPSHETLTRC 501: CLGMEESLNS VYRQSRVADN SVGPLEIRVV RNGTFEELMD YAISRGASIN QYKVPRCVNF TPIVELLDSR VVSAHFSPSL PHWTPERRRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)