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AT1G80240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24012629 (2013): nucleus
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF642
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF642; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 387 Blast hits to 327 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 381; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTJCeggNOG:ENOG41107SPEMBL:AC009322EMBL:BT032869
EMBL:CP002684EnsemblPlants:AT1G80240EnsemblPlants:AT1G80240.1entrez:844364
GeneID:844364GO:GO:0009505Gramene:AT1G80240.1hmmpanther:PTHR31265
hmmpanther:PTHR31265:SF9HOGENOM:HOG000231422InterPro:IPR006946InterPro:IPR008979
KEGG:ath:AT1G80240OMA:YVFPTAKPfam:PF04862PhylomeDB:Q9SSB7
PIR:A96834Proteomes:UP000006548RefSeq:NP_178141.1STRING:3702.AT1G80240.1
SUPFAM:SSF49785TAIR:AT1G80240UniGene:At.21525UniGene:At.48401
UniProt:Q9SSB7
Coordinates (TAIR10) chr1:-:30171520..30172799
Molecular Weight (calculated) 40228.50 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.02
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)