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AT2G40360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), BOP1, N-terminal (InterPro:IPR012953), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT5G01770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRBXeggNOG:KOG0650EMBL:CP002685EnsemblPlants:AT2G40360EnsemblPlants:AT2G40360.1entrez:818629Gene3D:2.130.10.10
GeneID:818629GO:GO:0000463GO:GO:0000466GO:GO:0005654GO:GO:0030687GO:GO:0043021GO:GO:0070545
Gramene:AT2G40360.1HAMAP:MF_03027hmmpanther:PTHR17605InParanoid:F4IH25InterPro:IPR001680InterPro:IPR012953InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR028598KEGG:ath:AT2G40360KO:K14824OMA:EDPDFWRPaxDb:F4IH25
Pfam:PF00400Pfam:PF08145Pfscan:PS50082Pfscan:PS50294PRIDE:F4IH25PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:F4IH25Proteomes:UP000006548RefSeq:NP_181567.3scanprosite:PS00678SMART:SM00320SMART:SM01035
SMR:F4IH25STRING:3702.AT2G40360.1SUPFAM:SSF50978TAIR:AT2G40360UniGene:At.25164UniProt:F4IH25
Coordinates (TAIR10) chr2:-:16853123..16856635
Molecular Weight (calculated) 85387.60 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.75
Length 753 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKRSKGANE DKLIETKSKN VSGKSQKQKK PVEAESLKEE DLLQASGTDS DYDGDSLPGS LNSDDFDSDF SDSEDDGTHE GTEDGDVEFS DDDDVLEHDG
101: SIDNEDDDGS EHVGSDNNEE HGSDEDSERG EAVEESDSSE DEVPSRNTVG NVPLKWYEDE KHIGYDLTGK KITKKEKQDK LDSFLATIDD SKTWRKIYDE
201: YNDEDVELTK EESKIVQRIL KGEAPHADFD PYAPYVEWFK HDDAIHPLSS APEPKRRFIP SKWEAKKVVK IVRAIRKGWI KFDKPEEEPN VYLLWGDDST
301: SDQKSKHLTY IPPPKLKLPG HDESYNPSLE YIPTEEEKAS YELMFEEDRP KFIPTRFTSL RSIPAYENAL KESFERCLDL YLCPRVRKKR INIDPESLKP
401: KLPSRKDLRP YPNSCYLEYK GHTGAVTSIS TDSSGEWIAS GSTDGSVRMW EVETGRCLKV WQFDEAIMCV AWNPLSRLPV LAVAMGRDLF FLNTELGTDE
501: EQEITKERLH SGNIPEPDAS VAAIVTWLPD ELYGGIKIRH FKSISSIDWH RKGDYLSTVM ASGETRGVVL HQLSKQKTQR LPFKIRGLPV CTLFHPSLSY
601: FFVATRKDVR VYNLLKPGEA TKKLETGLRE ISSMAIHPGG DNLIVGSKEG KMCWFDMDLS SKPYKTLKNH PKDITNVAVH RSYPLFASCS EDSTAYVFHG
701: MVYNDLNQNP LIVPLEILRG HSSKGGVLDC KFHPRQPWLF TAGADSIIKL YCH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)