AT2G39950.1
|
Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:nucleus 0.734 What is SUBAcon? What is ASURE? SUBAcon computations |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:16676758..16680204 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68191.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSRKRDTG DDHQHRDDQP NDGDDLSISS STTDDSQFNG TEGENELTRI ESRVSDPLTD ATGGDFLVGE DRVLRWLQAL DMQVMGACRG DERLKPLLKL 101: NVSNGMAEDR LLAHLSQHFE PAEIGMLARC FCIPLVSVRV GKIIKEGILM RPTPIRGNLS LMVLPTSDLR LSFIGDNGHS EQLFTYTSKS QCSAVSIEEI 201: TVDSSGRSFV IRIANGNAFY YWCSEKSKLL GTELRRKMKD LIKKKPSISE LTGIEESRLG SVASHLRLYL MGSVVPNIKG CQVPSPDSSS SSGFSETADS 301: SSSASSKSLR ARHCGTQQTK TQGSLSPRAS SFKENTLRNA SLRISSRDKS KGHSEGHFSI FDNSSITSIP TNVEGFIQSE GEVEEATENY NGIRQIIAFE 401: EAESTPSTMT GPPPFPLKMG PPVFSPYYCW CPPTTSSLHA PSASYQFPPL SIELPSLPPL SSLLPASGSD GFLIPSSPLD LSDIPPLPLV HHIPIPGSSS 501: SSSQQQMMIP IMCDPIVHIP VIDIFSSGQS YLVSAGPTGI ISTGIPPLPV ENDSLVEKGA RETLRLLISG ANATTSTPLN HHGSRGLYSV SRDVSGVSLF 601: APIGLQQPSS VEGGDGGGES VSSSEAVPAP PRETSG |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)