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AT2G39950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.734
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGR8eggNOG:ENOG4111TIGEMBL:AF002109EMBL:BT046179EMBL:CP002685EnsemblPlants:AT2G39950EnsemblPlants:AT2G39950.1
entrez:818582ExpressionAtlas:O04198GeneID:818582Gramene:AT2G39950.1hmmpanther:PTHR36741hmmpanther:PTHR36741:SF1HOGENOM:HOG000242092
ncoils:CoilOMA:TRIESRVPhylomeDB:O04198PIR:D84823Proteomes:UP000006548RefSeq:NP_181524.1STRING:3702.AT2G39950.1
TAIR:AT2G39950UniGene:At.14664UniProt:O04198
Coordinates (TAIR10) chr2:-:16676758..16680204
Molecular Weight (calculated) 68191.40 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.30
Length 636 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSRKRDTG DDHQHRDDQP NDGDDLSISS STTDDSQFNG TEGENELTRI ESRVSDPLTD ATGGDFLVGE DRVLRWLQAL DMQVMGACRG DERLKPLLKL
101: NVSNGMAEDR LLAHLSQHFE PAEIGMLARC FCIPLVSVRV GKIIKEGILM RPTPIRGNLS LMVLPTSDLR LSFIGDNGHS EQLFTYTSKS QCSAVSIEEI
201: TVDSSGRSFV IRIANGNAFY YWCSEKSKLL GTELRRKMKD LIKKKPSISE LTGIEESRLG SVASHLRLYL MGSVVPNIKG CQVPSPDSSS SSGFSETADS
301: SSSASSKSLR ARHCGTQQTK TQGSLSPRAS SFKENTLRNA SLRISSRDKS KGHSEGHFSI FDNSSITSIP TNVEGFIQSE GEVEEATENY NGIRQIIAFE
401: EAESTPSTMT GPPPFPLKMG PPVFSPYYCW CPPTTSSLHA PSASYQFPPL SIELPSLPPL SSLLPASGSD GFLIPSSPLD LSDIPPLPLV HHIPIPGSSS
501: SSSQQQMMIP IMCDPIVHIP VIDIFSSGQS YLVSAGPTGI ISTGIPPLPV ENDSLVEKGA RETLRLLISG ANATTSTPLN HHGSRGLYSV SRDVSGVSLF
601: APIGLQQPSS VEGGDGGGES VSSSEAVPAP PRETSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)