AT1G64140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23804069..23806009 | ||||||||||||||||||||
| Molecular Weight (calculated) | 67497.10 Da | ||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||
| Length | 646 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHSRFQNIAF AGNSSSNSYK ILGRSLQVEV PEAADTTLRL DSLASPLSNA KGIKRKWNLI DGADPLLSLR LGHSSSSSDS KGSSATACTS LSSARETEEA 101: SSMDIELDFS LHLGNEKPTA SNKKPANLKM KGLQVPSPKF DLELSLSGGG SCQSEITAVQ QHANRFQSLA DMLRANNEES ATCGWRQGFG LPTLQASSSK 201: ETSSFLGHIP KNVIIPAAHV LELSSNTAAT TPISSGTCTS GLSQQLKPQL KNSSSSKLCQ VEGCHKGARG ASGRCISHGG GRRCQKHGCH KGAEGRTVYC 301: KAHGGGRRCE FLGCTKSAEG RTDFCIAHGG GRRCSHEDCT RAARGRSGLC IRHGGGKRCQ RENCTKSAEG LSGLCISHGG GRRCQSNGCT KGAQGSTMFC 401: KAHGGGKRCT HSGCTKGAEG STPFCKGHGG GKRCAFQGDD PCSKSVHGGT NFCVAHGGGK RCAVPECTKS ARGRTDFCVR HGGGKRCQSE GCGKSAQGST 501: DFCKAHGGGK RCAWGQPETE YAGQSSSGPC TSFARGKTGL CALHNSLVQD NRVHGGMTIT SESQEPRVSS SETENEEEFS GSQDMNMDTM KARSATGSPE 601: TDVDLNEYEA GLGLAPEGRV HGGSLMMAML GRDGGSGSTG GPKRWM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)