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AT1G36730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor IF2/IF5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G77840.1); Has 6371 Blast hits to 4946 proteins in 714 species: Archae - 245; Bacteria - 804; Metazoa - 2020; Fungi - 758; Plants - 416; Viruses - 40; Other Eukaryotes - 2088 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1601eggNOG:KOG2767EMBL:AC025782EMBL:AY056208
EMBL:AY064061EMBL:AY096371EMBL:CP002684EnsemblPlants:AT1G36730
EnsemblPlants:AT1G36730.1entrez:840582Gene3D:1.25.40.180Gene3D:3.30.30.50
GeneID:840582Genevisible:Q9C8F1GO:GO:0003743GO:GO:0005525
GO:GO:0005829Gramene:AT1G36730.1hmmpanther:PTHR23001hmmpanther:PTHR23001:SF8
HOGENOM:HOG000214327InParanoid:Q9C8F1InterPro:IPR002735InterPro:IPR003307
InterPro:IPR016021InterPro:IPR016024InterPro:IPR016189InterPro:IPR016190
iPTMnet:Q9C8F1KEGG:ath:AT1G36730KO:K03262ncoils:Coil
OMA:VTPFIEWPaxDb:Q9C8F1Pfam:PF01873Pfam:PF02020
Pfam:Q9C8F1Pfscan:PS51363PhylomeDB:Q9C8F1PIR:C86487
PRIDE:Q9C8F1PRO:PR:Q9C8F1PROSITE:PS51363ProteinModelPortal:Q9C8F1
Proteomes:UP000006548Reactome:R-ATH-72702RefSeq:NP_174877.1SMART:SM00515
SMART:SM00653SMR:Q9C8F1STRING:3702.AT1G36730.1SUPFAM:SSF100966
SUPFAM:SSF48371SUPFAM:SSF75689TAIR:AT1G36730UniGene:At.22980
UniGene:At.3809UniGene:At.67142UniProt:Q9C8F1
Coordinates (TAIR10) chr1:-:13898706..13900025
Molecular Weight (calculated) 48625.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.67
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQNIGASN RDDAFYRYKM PRMMTKIEGR GNGIKTNVVN MVEIAKALGR PAAYTTKYFG CELGAQSKFD EKNGTSLVNG AHDTSKLAGL LENFIKKYVQ
101: CYGCGNPETE ILITKTQMLQ LKCAACGFLS DVDMRDKLTS FILKNPPEQK KSSKDKKSMR RAEKERLREG EAADEEMRKL KKEAASKKKA ATTGTSKDKV
201: SKKKDHSPPR SLSDENDQAD SEEDDDDVQW QTDTSREAAE KRMKEQLSAV TAEMVMLSTV EEKKPVAEVK KAPEQVHENG NSKIPENAHE KLVNEIKELL
301: SSGSSPTQLK TALASNSANP QEKMDALFSA LFGGTGKGFA KEVIKKKKYL LALMMMQEEA GAPAQMGLLN GIESFCMKAS AEAAKEVALV IKGLYDEDIL
401: DEDVIVEWYN KGVKSSPVLK NVTPFIEWLQ NAESESEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)