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AT2G20690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lumazine-binding family protein
Curator
Summary (TAIR10)
A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase.
Computational
Description (TAIR10)
lumazine-binding family protein; FUNCTIONS IN: binding, riboflavin synthase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Lumazine-binding protein (InterPro:IPR001783); Has 6777 Blast hits to 6682 proteins in 2207 species: Archae - 44; Bacteria - 4232; Metazoa - 1; Fungi - 143; Plants - 41; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G20690-MONOMERBioCyc:MetaCyc:AT2G20690-MONOMERDNASU:816597eggNOG:COG0307
eggNOG:KOG3310EMBL:AC006234EMBL:AF361622EMBL:AY081833
EMBL:CP002685EnsemblPlants:AT2G20690EnsemblPlants:AT2G20690.1entrez:816597
Gene3D:2.40.30.20GeneID:816597GO:GO:0004746GO:GO:0009231
GO:GO:0009507GO:GO:0016491Gramene:AT2G20690.1hmmpanther:PTHR21098
hmmpanther:PTHR21098:SF0HOGENOM:HOG000151757InterPro:IPR001783InterPro:IPR017938
InterPro:IPR023366InterPro:IPR026017KEGG:00190+3.6.3.14KEGG:00740+2.5.1.9
KEGG:ath:AT2G20690KO:K00793OMA:GMADHGGPANTHER:PTHR21098
Pfam:PF00677Pfscan:PS51177PhylomeDB:Q9SKU8PIR:B84592
PROSITE:PS51177Proteomes:UP000006548RefSeq:NP_565482.1SMR:Q9SKU8
STRING:3702.AT2G20690.1SUPFAM:SSF63380TAIR:AT2G20690TIGRfam:TIGR00187
TIGRFAMs:TIGR00187UniGene:At.27578UniGene:At.39657unipathway:UPA00275
UniProt:Q9SKU8
Coordinates (TAIR10) chr2:+:8923342..8924621
Molecular Weight (calculated) 29641.00 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.08
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MMAARTHCIN LIPKVCLPQS FRTGESVTNL RFDCVSKSSK LSLKTSCGRS RTHHRRQNLS IRSVFTGIVE EMGEVKDLGM ADHGGFDLKI GARVVLEDVK
101: LGDSIAVNGT CLTVTEFNAE EFTVGLAPET LRKTSLEELK KGSPVNLERA LQPVSRMGGH VVQGHVDGTG VIESMEVEGD SLWVKVKADK GLLKYIVPKG
201: FVAVDGTSLT VVDVFDEESC FNFMMIAYTQ QNVVIPTKKI GQKVNLEVDI MGKYVERLLT SGGFSKGKEN I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)